6J2G image
Deposition Date 2019-01-01
Release Date 2019-09-18
Last Version Date 2024-10-30
Entry Detail
PDB ID:
6J2G
Keywords:
Title:
Crystal structure of bat (Pteropus Alecto) MHC class I Ptal-N*01:01 in complex with Ebola virus-derived peptide EBOV-NP2
Biological Source:
Source Organism:
Pteropus alecto (Taxon ID: 9402)
Homo sapiens (Taxon ID: 9606)
Ebola virus sp. (Taxon ID: 205488)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.41 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Ptal-N*01:01
Gene (Uniprot):Ptal-N
Chain IDs:A, D
Chain Length:277
Number of Molecules:2
Biological Source:Pteropus alecto
Polymer Type:polypeptide(L)
Molecule:Beta-2-microglobulin
Gene (Uniprot):B2M
Chain IDs:B, E
Chain Length:99
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:EBOV-NP2
Chain IDs:C, F
Chain Length:11
Number of Molecules:2
Biological Source:Ebola virus sp.
Primary Citation
Peptide presentation by bat MHC class I provides new insight into the antiviral immunity of bats.
Plos Biol. 17 e3000436 e3000436 (2019)
PMID: 31498797 DOI: 10.1371/journal.pbio.3000436

Abstact

Bats harbor many zoonotic viruses, including highly pathogenic viruses of humans and other mammals, but they are typically asymptomatic in bats. To further understand the antiviral immunity of bats, we screened and identified a series of bat major histocompatibility complex (MHC) I Ptal-N*01:01-binding peptides derived from four different bat-borne viruses, i.e., Hendra virus (HeV), Ebola virus (EBOV), Middle East respiratory syndrome coronavirus (MERS-CoV), and H17N10 influenza-like virus. The structures of Ptal-N*01:01 display unusual peptide presentation features in that the bat-specific 3-amino acid (aa) insertion enables the tight "surface anchoring" of the P1-Asp in pocket A of bat MHC I. As the classical primary anchoring positions, the B and F pockets of Ptal-N*01:01 also show unconventional conformations, which contribute to unusual peptide motifs and distinct peptide presentation. Notably, the features of bat MHC I may be shared by MHC I from various marsupials. Our study sheds light on bat adaptive immunity and may benefit future vaccine development against bat-borne viruses of high impact on humans.

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