6J1E image
Entry Detail
PDB ID:
6J1E
Title:
Crystal structure of HypX from Aquifex aeolicus (Crystal Form II)
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2018-12-28
Release Date:
2019-11-06
Method Details:
Experimental Method:
Resolution:
2.40 Å
R-Value Free:
0.24
R-Value Work:
0.18
Space Group:
P 41 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Hydrogenase regulation HoxX
Chain IDs:A
Chain Length:582
Number of Molecules:1
Biological Source:Aquifex aeolicus VF5
Ligand Molecules
Primary Citation
Structural characterization of HypX responsible for CO biosynthesis in the maturation of NiFe-hydrogenase.
Commun Biol 2 385 385 (2019)
PMID: 31646188 DOI: 10.1038/s42003-019-0631-z

Abstact

Several accessory proteins are required for the assembly of the metal centers in hydrogenases. In NiFe-hydrogenases, CO and CN- are coordinated to the Fe in the NiFe dinuclear cluster of the active center. Though these diatomic ligands are biosynthesized enzymatically, detail mechanisms of their biosynthesis remain unclear. Here, we report the structural characterization of HypX responsible for CO biosynthesis to assemble the active site of NiFe hydrogenase. CoA is constitutionally bound in HypX. Structural characterization of HypX suggests that the formyl-group transfer will take place from N10-formyl-THF to CoA to form formyl-CoA in the N-terminal domain of HypX, followed by decarbonylation of formyl-CoA to produce CO in the C-terminal domain though the direct experimental results are not available yet. The conformation of CoA accommodated in the continuous cavity connecting the N- and C-terminal domains will interconvert between the extended and the folded conformations for HypX catalysis.

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