6J11 image
Deposition Date 2018-12-27
Release Date 2019-07-24
Last Version Date 2024-11-13
Entry Detail
PDB ID:
6J11
Keywords:
Title:
MERS-CoV spike N-terminal domain and 7D10 scFv complex
Biological Source:
Method Details:
Experimental Method:
Resolution:
3.00 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:N-terminal domain of Spike glycoprotein
Chain IDs:A, B, C
Chain Length:336
Number of Molecules:3
Biological Source:Middle East respiratory syndrome-related coronavirus
Polymer Type:polypeptide(L)
Molecule:VH of 7D10
Chain IDs:D (auth: H), F (auth: D), H (auth: F)
Chain Length:132
Number of Molecules:3
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:VL of 7D10
Chain IDs:E (auth: L), G (auth: E), I (auth: G)
Chain Length:111
Number of Molecules:3
Biological Source:Mus musculus
Ligand Molecules
Primary Citation
Structural definition of a neutralization epitope on the N-terminal domain of MERS-CoV spike glycoprotein.
Nat Commun 10 3068 3068 (2019)
PMID: 31296843 DOI: 10.1038/s41467-019-10897-4

Abstact

Most neutralizing antibodies against Middle East respiratory syndrome coronavirus (MERS-CoV) target the receptor-binding domain (RBD) of the spike glycoprotein and block its binding to the cellular receptor dipeptidyl peptidase 4 (DPP4). The epitopes and mechanisms of mAbs targeting non-RBD regions have not been well characterized yet. Here we report the monoclonal antibody 7D10 that binds to the N-terminal domain (NTD) of the spike glycoprotein and inhibits the cell entry of MERS-CoV with high potency. Structure determination and mutagenesis experiments reveal the epitope and critical residues on the NTD for 7D10 binding and neutralization. Further experiments indicate that the neutralization by 7D10 is not solely dependent on the inhibition of DPP4 binding, but also acts after viral cell attachment, inhibiting the pre-fusion to post-fusion conformational change of the spike. These properties give 7D10 a wide neutralization breadth and help explain its synergistic effects with several RBD-targeting antibodies.

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Protein

Chemical

Disease

Primary Citation of related structures
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