6IY6 image
Deposition Date 2018-12-13
Release Date 2019-09-11
Last Version Date 2023-11-22
Entry Detail
PDB ID:
6IY6
Keywords:
Title:
Crystal structure of human cytosolic aspartyl-tRNA synthetase (DRS) in complex with glutathion-S transferase (GST) domains from Aminoacyl tRNA synthase complex-interacting multifunctional protein 2 (AIMP2) and glutamyl-prolyl-tRNA synthetase (EPRS)
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.60 Å
R-Value Free:
0.27
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 61
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Aspartate--tRNA ligase, cytoplasmic
Gene (Uniprot):DARS1
Chain IDs:A, B, G, H
Chain Length:502
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Aminoacyl tRNA synthase complex-interacting multifunctional protein 2
Gene (Uniprot):AIMP2
Chain IDs:C, D, I, J
Chain Length:215
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Bifunctional glutamate/proline--tRNA ligase
Gene (Uniprot):EPRS1
Chain IDs:E, F, K, L
Chain Length:165
Number of Molecules:4
Biological Source:Homo sapiens
Primary Citation
The DRS-AIMP2-EPRS subcomplex acts as a pivot in the multi-tRNA synthetase complex.
Iucrj 6 958 967 (2019)
PMID: 31576228 DOI: 10.1107/S2052252519010790

Abstact

Aminoacyl-tRNA synthetases (ARSs) play essential roles in protein biosynthesis as well as in other cellular processes, often using evolutionarily acquired domains. For possible cooperativity and synergistic effects, nine ARSs assemble into the multi-tRNA synthetase complex (MSC) with three scaffold proteins: aminoacyl-tRNA synthetase complex-interacting multifunctional proteins 1, 2 and 3 (AIMP1, AIMP2 and AIMP3). X-ray crystallographic methods were implemented in order to determine the structure of a ternary subcomplex of the MSC comprising aspartyl-tRNA synthetase (DRS) and two glutathione S-transferase (GST) domains from AIMP2 and glutamyl-prolyl-tRNA synthetase (AIMP2GST and EPRSGST, respectively). While AIMP2GST and EPRSGST interact via conventional GST heterodimerization, DRS strongly interacts with AIMP2GST via hydrogen bonds between the α7-β9 loop of DRS and the β2-α2 loop of AIMP2GST, where Ser156 of AIMP2GST is essential for the assembly. Structural analyses of DRS-AIMP2GST-EPRSGST reveal its pivotal architecture in the MSC and provide valuable insights into the overall assembly and conditionally required disassembly of the MSC.

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Primary Citation of related structures