6IWR image
Deposition Date 2018-12-06
Release Date 2019-02-06
Last Version Date 2024-11-20
Entry Detail
PDB ID:
6IWR
Keywords:
Title:
Crystal structure of GalNAc-T7 with UDP, GalNAc and Mn2+
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.60 Å
R-Value Free:
0.25
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:N-acetylgalactosaminyltransferase 7
Gene (Uniprot):GALNT7
Chain IDs:A, B, C, D, E, F
Chain Length:597
Number of Molecules:6
Biological Source:Homo sapiens
Primary Citation
Structural basis of carbohydrate transfer activity of UDP-GalNAc: Polypeptide N-acetylgalactosaminyltransferase 7.
Biochem. Biophys. Res. Commun. 510 266 271 (2019)
PMID: 30685086 DOI: 10.1016/j.bbrc.2019.01.084

Abstact

The UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferases (GalNAc-Ts) catalyze mucin-type O-glycosylation by transferring α-N-acetylgalactosamine (GalNAc) from UDP- GalNAc to Ser or Thr residues of target proteins. We resolved the crystal structures of GalNAc-T7, a GalNAc-T capable of glycosylating consecutive sites, and of its complex with the donor substrate UDP-GalNAc. The N-terminal catalytic domain and C-terminal lectin domain are connected by a flexible linker, forming a narrow cleft for the acceptor substrate. Only the α subdomain of the lectin domain binds to the glycosyl group, indicating that key residues determine substrate binding. Compared to the Apo structure, the loop covering the catalytic center of the complex show significant conformational changes, indicating the mechanism of the catalytic reaction.

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Primary Citation of related structures
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