6IVP image
Deposition Date 2018-12-04
Release Date 2019-11-06
Last Version Date 2024-05-29
Entry Detail
PDB ID:
6IVP
Title:
Crystal structure of a membrane protein P262A
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.80 Å
R-Value Free:
0.31
R-Value Work:
0.26
R-Value Observed:
0.26
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:bestrophin
Gene (Uniprot):APT92_19765, B5L96_30355, BANRA_02438, BANRA_04102, BL124_00003590, BV369_16880, CP554_21535, DM083_28480, DW281_00595, EAO17_00845, EAO28_28340, EXT45_12770, FXN67_01795, GJJ01_10895, GJJ08_012945, GJJ18_05220, GNF00_19285, H3G96_014970, I8R04_28825, JMZ77_12400, LS45_10030, NCTC11679_02573, NCTC13465_00112, NCTC5052_01714, NCTC8849_03195, NCTC9637_03467, NCTC9645_05950, NCTC9661_03571, Q6294_11555, SAMEA2273558_01246, SAMEA3499874_04755, SAMEA3649591_04364, SAMEA3649615_00575, SAMEA3720909_04618, SAMEA3729652_00264, SAMEA4873597_00862
Mutagens:P262A
Chain IDs:A, B, C, D, E
Chain Length:297
Number of Molecules:5
Biological Source:Klebsiella pneumoniae
Primary Citation
Dual Ca2+-dependent gates in human Bestrophin1 underlie disease-causing mechanisms of gain-of-function mutations.
Commun Biol 2 240 240 (2019)
PMID: 31263784 DOI: 10.1038/s42003-019-0433-3

Abstact

Mutations of human BEST1, encoding a Ca2+-activated Cl- channel (hBest1), cause macular degenerative disorders. Best1 homolog structures reveal an evolutionarily conserved channel architecture highlighted by two landmark restrictions (named the "neck" and "aperture", respectively) in the ion conducting pathway, suggesting a unique dual-switch gating mechanism, which, however, has not been characterized well. Using patch clamp and crystallography, we demonstrate that both the neck and aperture in hBest1 are Ca2+-dependent gates essential for preventing channel leakage resulting from Ca2+-independent, spontaneous gate opening. Importantly, three patient-derived mutations (D203A, I205T and Y236C) lead to Ca2+-independent leakage and elevated Ca2+-dependent anion currents due to enhanced opening of the gates. Moreover, we identify a network of residues critically involved in gate operation. Together, our results suggest an indispensable role of the neck and aperture of hBest1 for channel gating, and uncover disease-causing mechanisms of hBest1 gain-of-function mutations.

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Primary Citation of related structures