6IVA image
Entry Detail
PDB ID:
6IVA
Title:
Crystal structure of the S. typhimurium oxaloacetate decarboxylase beta-gamma sub-complex
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2018-12-03
Release Date:
2020-06-24
Method Details:
Experimental Method:
Resolution:
4.40 Å
R-Value Free:
0.33
R-Value Work:
0.30
R-Value Observed:
0.31
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Oxaloacetate decarboxylase beta chain
Chain IDs:A, C, E
Chain Length:433
Number of Molecules:3
Biological Source:Salmonella enterica I
Polymer Type:polypeptide(L)
Description:Probable oxaloacetate decarboxylase gamma chain
Chain IDs:B, D, F
Chain Length:104
Number of Molecules:3
Biological Source:Salmonella enterica I
Ligand Molecules
Primary Citation
Structural insights into sodium transport by the oxaloacetate decarboxylase sodium pump.
Elife 9 ? ? (2020)
PMID: 32459174 DOI: 10.7554/eLife.53853

Abstact

The oxaloacetate decarboxylase sodium pump (OAD) is a unique primary-active transporter that utilizes the free energy derived from oxaloacetate decarboxylation for sodium transport across the cell membrane. It is composed of 3 subunits: the α subunit catalyzes carboxyl-transfer from oxaloacetate to biotin, the membrane integrated β subunit catalyzes the subsequent carboxyl-biotin decarboxylation and the coupled sodium transport, the γ subunit interacts with the α and β subunits and stabilizes the OAD complex. We present here structure of the Salmonella typhimurium OAD βγ sub-complex. The structure revealed that the β and γ subunits form a β3γ3 hetero-hexamer with extensive interactions between the subunits and shed light on the OAD holo-enzyme assembly. Structure-guided functional studies provided insights into the sodium binding sites in the β subunit and the coupling between carboxyl-biotin decarboxylation and sodium transport by the OAD β subunit.

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