6IUY image
Entry Detail
PDB ID:
6IUY
Keywords:
Title:
Structure of DsGPDH of Dunaliella salina
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2018-12-01
Release Date:
2019-12-04
Method Details:
Experimental Method:
Resolution:
2.20 Å
R-Value Free:
0.24
R-Value Work:
0.19
R-Value Observed:
0.20
Space Group:
P 41 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Glycerol-3-phosphate dehydrogenase [NAD(+)]
Chain IDs:A, B
Chain Length:624
Number of Molecules:2
Biological Source:Dunaliella salina
Primary Citation
The unusual di-domain structure of Dunaliella salina glycerol-3-phosphate dehydrogenase enables direct conversion of dihydroxyacetone phosphate to glycerol.
Plant J. 102 153 164 (2020)
PMID: 31762135 DOI: 10.1111/tpj.14619

Abstact

Dunaliella has been extensively studied due to its intriguing adaptation to high salinity. Its di-domain glycerol-3-phosphate dehydrogenase (GPDH) isoform is likely to underlie the rapid production of the osmoprotectant glycerol. Here, we report the structure of the chimeric Dunaliella salina GPDH (DsGPDH) protein featuring a phosphoserine phosphatase-like domain fused to the canonical glycerol-3-phosphate (G3P) dehydrogenase domain. Biochemical assays confirm that DsGPDH can convert dihydroxyacetone phosphate (DHAP) directly to glycerol, whereas a separate phosphatase protein is required for this conversion process in most organisms. The structure of DsGPDH in complex with its substrate DHAP and co-factor nicotinamide adenine dinucleotide (NAD) allows the identification of the residues that form the active sites. Furthermore, the structure reveals an intriguing homotetramer form that likely contributes to the rapid biosynthesis of glycerol.

Legend

Protein

Chemical

Disease

Primary Citation of related structures