6IUK image
Deposition Date 2018-11-28
Release Date 2020-02-26
Last Version Date 2024-03-27
Entry Detail
PDB ID:
6IUK
Keywords:
Title:
Cryo-EM structure of Murine Norovirus capsid
Biological Source:
Method Details:
Experimental Method:
Resolution:
3.50 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Major capsid protein VP1
Gene (Uniprot):VP1
Chain IDs:A, B, C
Chain Length:541
Number of Molecules:3
Biological Source:Murine norovirus GV/NIH-2410/2005/USA
Ligand Molecules
Primary Citation
Dynamic rotation of the protruding domain enhances the infectivity of norovirus.
Plos Pathog. 16 e1008619 e1008619 (2020)
PMID: 32614892 DOI: 10.1371/journal.ppat.1008619

Abstact

Norovirus is the major cause of epidemic nonbacterial gastroenteritis worldwide. Lack of structural information on infection and replication mechanisms hampers the development of effective vaccines and remedies. Here, using cryo-electron microscopy, we show that the capsid structure of murine noroviruses changes in response to aqueous conditions. By twisting the flexible hinge connecting two domains, the protruding (P) domain reversibly rises off the shell (S) domain in solutions of higher pH, but rests on the S domain in solutions of lower pH. Metal ions help to stabilize the resting conformation in this process. Furthermore, in the resting conformation, the cellular receptor CD300lf is readily accessible, and thus infection efficiency is significantly enhanced. Two similar P domain conformations were also found simultaneously in the human norovirus GII.3 capsid, although the mechanism of the conformational change is not yet clear. These results provide new insights into the mechanisms of non-enveloped norovirus transmission that invades host cells, replicates, and sometimes escapes the hosts immune system, through dramatic environmental changes in the gastrointestinal tract.

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Protein

Chemical

Disease

Primary Citation of related structures
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