6ITL image
Deposition Date 2018-11-23
Release Date 2019-11-27
Last Version Date 2023-11-22
Entry Detail
PDB ID:
6ITL
Keywords:
Title:
Crystal structure of malate dehydrogenase from Mannheimia succiniciproducens in complex with NAD
Biological Source:
Method Details:
Experimental Method:
Resolution:
1.97 Å
R-Value Free:
0.21
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 64 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Malate dehydrogenase
Gene (Uniprot):mdh
Chain IDs:A
Chain Length:320
Number of Molecules:1
Biological Source:Mannheimia succiniciproducens (strain MBEL55E)
Primary Citation
Enhanced succinic acid production by Mannheimia employing optimal malate dehydrogenase.
Nat Commun 11 1970 1970 (2020)
PMID: 32327663 DOI: 10.1038/s41467-020-15839-z

Abstact

Succinic acid (SA), a dicarboxylic acid of industrial importance, can be efficiently produced by metabolically engineered Mannheimia succiniciproducens. Malate dehydrogenase (MDH) is one of the key enzymes for SA production, but has not been well characterized. Here we report biochemical and structural analyses of various MDHs and development of hyper-SA producing M. succiniciproducens by introducing the best MDH. Corynebacterium glutamicum MDH (CgMDH) shows the highest specific activity and least substrate inhibition, whereas M. succiniciproducens MDH (MsMDH) shows low specific activity at physiological pH and strong uncompetitive inhibition toward oxaloacetate (ki of 67.4 and 588.9 μM for MsMDH and CgMDH, respectively). Structural comparison of the two MDHs reveals a key residue influencing the specific activity and susceptibility to substrate inhibition. A high-inoculum fed-batch fermentation of the final strain expressing cgmdh produces 134.25 g L-1 of SA with the maximum productivity of 21.3 g L-1 h-1, demonstrating the importance of enzyme optimization in strain development.

Legend

Protein

Chemical

Disease

Primary Citation of related structures