6IRK image
Entry Detail
PDB ID:
6IRK
Keywords:
Title:
Crystal structure of glucose isomerase by fixed-target serial femtosecond crystallography
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2018-11-13
Release Date:
2019-05-22
Method Details:
Experimental Method:
Resolution:
1.75 Å
R-Value Free:
0.20
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
I 2 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Xylose isomerase
Chain IDs:A
Chain Length:388
Number of Molecules:1
Biological Source:Streptomyces rubiginosus
Ligand Molecules
Primary Citation
Nylon mesh-based sample holder for fixed-target serial femtosecond crystallography.
Sci Rep 9 6971 6971 (2019)
PMID: 31061502 DOI: 10.1038/s41598-019-43485-z

Abstact

Fixed-target serial femtosecond crystallography (FT-SFX) was an important advance in crystallography by dramatically reducing sample consumption, while maintaining the benefits of SFX for obtaining crystal structures at room temperature without radiation damage. Despite a number of advantages, preparation of a sample holder for the sample delivery in FT-SFX with the use of many crystals in a single mount at ambient temperature is challenging as it can be complicated and costly, and thus, development of an efficient sample holder is essential. In this study, we introduced a nylon mesh-based sample holder enclosed by a polyimide film. This sample holder can be rapidly manufactured using a commercially available nylon mesh with pores of a desired size at a low cost without challenging technology. Furthermore, this simple device is highly efficient in data acquisition. We performed FT-SFX using a nylon mesh-based sample holder and collected over 130,000 images on a single sample holder using a 30 Hz X-ray pulse for 1.2 h. We determined the crystal structures of lysozyme and glucose isomerase using the nylon mesh at 1.65 and 1.75 Å, respectively. The nylon mesh exposed to X-rays produced very low levels of background scattering at 3.75 and 4.30 Å, which are negligible for data analysis. Our method provides a simple and rapid but highly efficient way to deliver samples for FT-SFX.

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