6IR4 image
Entry Detail
PDB ID:
6IR4
Keywords:
Title:
Crystal structure of BioU from Synechocystis sp.PCC6803 (apo form)
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2018-11-10
Release Date:
2020-01-15
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.27
R-Value Work:
0.20
R-Value Observed:
0.21
Space Group:
P 31 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Slr0355 protein
Chain IDs:A
Chain Length:343
Number of Molecules:1
Biological Source:Synechocystis sp. PCC 6803
Primary Citation
A suicide enzyme catalyzes multiple reactions for biotin biosynthesis in cyanobacteria.
Nat.Chem.Biol. 16 415 422 (2020)
PMID: 32042199 DOI: 10.1038/s41589-019-0461-9

Abstact

In biotin biosynthesis, the conversion of pimeloyl intermediates to biotin is catalyzed by a universal set of four enzymes: BioF, BioA, BioD and BioB. We found that the gene homologous to bioA, the product of which is involved in the conversion of 8-amino-7-oxononanoate (AON) to 7,8-diaminononanoate (DAN), is missing in the genome of the cyanobacterium Synechocystis sp. PCC 6803. We provide structural and biochemical evidence showing that a novel dehydrogenase, BioU, is involved in biotin biosynthesis and functionally replaces BioA. This enzyme catalyzes three reactions: formation of covalent linkage with AON to yield a BioU-DAN conjugate at the ε-amino group of Lys124 of BioU using NAD(P)H, carboxylation of the conjugate to form BioU-DAN-carbamic acid, and release of DAN-carbamic acid using NAD(P)+. In this biosynthetic pathway, BioU is a suicide enzyme that loses the Lys124 amino group after a single round of reaction.

Legend

Protein

Chemical

Disease

Primary Citation of related structures