6IQZ image
Entry Detail
PDB ID:
6IQZ
Keywords:
Title:
High resolution structure of bilirubin oxidase from Myrothecium verrucaria - wild type
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2018-11-09
Release Date:
2018-11-21
Method Details:
Experimental Method:
Resolution:
1.46 Å
R-Value Free:
0.16
R-Value Work:
0.13
R-Value Observed:
0.13
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Bilirubin oxidase
Chain IDs:A
Chain Length:538
Number of Molecules:1
Biological Source:Myrothecium verrucaria
Primary Citation
Redox Potential-Dependent Formation of an Unusual His-Trp Bond in Bilirubin Oxidase.
Chemistry 24 18052 18058 (2018)
PMID: 30156345 DOI: 10.1002/chem.201803798

Abstact

Bilirubin oxidase (BOD) belongs to the family of blue multicopper oxidases, and catalyzes the concomitant oxidation of bilirubin to biliverdin and the reduction of molecular oxygen to water via a four-electron reduction system. The active sites of BOD comprise four copper atoms; type I copper (T1Cu) forms a mononuclear site, and a cluster of three copper atoms forms a trinuclear center. In the present study, we determined the high-resolution crystal structures of BOD from the fungus Myrothecium verrucaria. We investigated wild-type (WT) BOD and a BOD mutant called Met467Gln, which is inactive against bilirubin. The structures revealed that a novel post-translational crosslink between Trp396 and His398 is formed in the vicinity of the T1Cu site in WT BOD, whereas it is absent in the Met467Gln mutant. Our structural and computational studies suggest that the His-Trp crosslink adjusts the redox potential of T1Cu to that of bilirubin to efficiently abstract electrons from the substrate.

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