6IQO image
Entry Detail
PDB ID:
6IQO
Title:
Se-Met L45M Programmed Cell Death 5 protein from Sulfolobus solfataricus
Biological Source:
PDB Version:
Deposition Date:
2018-11-08
Release Date:
2019-02-20
Method Details:
Experimental Method:
Resolution:
2.11 Å
R-Value Free:
0.28
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:DNA-binding protein SSO0352
Mutations:L45M
Chain IDs:A, B
Chain Length:124
Number of Molecules:2
Biological Source:Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
Ligand Molecules
Primary Citation
Crystal structure of the programmed cell death 5 protein from Sulfolobus solfataricus.
Acta Crystallogr F Struct Biol Commun 75 73 79 (2019)
PMID: 30713157 DOI: 10.1107/S2053230X18017673

Abstact

Programmed cell death 5 (PDCD5) is a vital signaling protein in the apoptosis pathway in eukaryotes. It is known that there are two dissociated N-terminal regions and a triple-helix core in eukaryotic PDCD5. Structural and functional studies of PDCD5 from hyperthermophilic archaea have been limited to date. Here, the PDCD5 homolog Sso0352 (SsoPDCD5) was identified in Sulfolobus solfataricus, the SsoPDCD5 protein was expressed and crystallized, and the phase was identified by single-wavelength anomalous diffraction. The native SsoPDCD5 crystal belonged to space group C2 and diffracted to 1.49 Å resolution. This is the first crystal structure of a PDCD5 homolog to be solved. SsoPDCD5 shares a similar triple-helix bundle with eukaryotic PDCD5 but has a long α-helix in the N-terminus. A structural search and biochemical data suggest that SsoPDCD5 may function as a DNA-binding protein.

Legend

Protein

Chemical

Disease

Primary Citation of related structures