6IOK image
Deposition Date 2018-10-30
Release Date 2019-04-03
Last Version Date 2025-07-02
Entry Detail
PDB ID:
6IOK
Title:
Cryo-EM structure of multidrug efflux pump MexAB-OprM (0 degree state)
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.64 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Outer membrane protein OprM
Gene (Uniprot):oprM
Chain IDs:G (auth: A), H (auth: B), I (auth: C)
Chain Length:474
Number of Molecules:3
Biological Source:Pseudomonas aeruginosa PAO1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Multidrug resistance protein MexB
Gene (Uniprot):mexB
Chain IDs:J (auth: F), K (auth: G), L (auth: E)
Chain Length:1054
Number of Molecules:3
Biological Source:Pseudomonas aeruginosa PAO1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Multidrug resistance protein MexA
Gene (Uniprot):mexA
Chain IDs:A (auth: I), B (auth: J), C (auth: K), D (auth: L), E (auth: M), F (auth: N)
Chain Length:362
Number of Molecules:6
Biological Source:Pseudomonas aeruginosa PAO1
Ligand Molecules
Primary Citation
Structures of the wild-type MexAB-OprM tripartite pump reveal its complex formation and drug efflux mechanism.
Nat Commun 10 1520 1520 (2019)
PMID: 30944318 DOI: 10.1038/s41467-019-09463-9

Abstact

In Pseudomonas aeruginosa, MexAB-OprM plays a central role in multidrug resistance by ejecting various drug compounds, which is one of the causes of serious nosocomial infections. Although the structures of the components of MexAB-OprM have been solved individually by X-ray crystallography, no structural information for fully assembled pumps from P. aeruginosa were previously available. In this study, we present the structure of wild-type MexAB-OprM in the presence or absence of drugs at near-atomic resolution. The structure reveals that OprM does not interact with MexB directly, and that it opens its periplasmic gate by forming a complex. Furthermore, we confirm the residues essential for complex formation and observed a movement of the drug entrance gate. Based on these results, we propose mechanisms for complex formation and drug efflux.

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Primary Citation of related structures