6IMQ image
Deposition Date 2018-10-23
Release Date 2019-07-31
Last Version Date 2024-03-27
Entry Detail
PDB ID:
6IMQ
Keywords:
Title:
Crystal structure of PML B1-box multimers
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.06 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Protein PML
Gene (Uniprot):PML
Chain IDs:A, B, C, D
Chain Length:51
Number of Molecules:4
Biological Source:Homo sapiens
Primary Citation
B1 oligomerization regulates PML nuclear body biogenesis and leukemogenesis.
Nat Commun 10 3789 3789 (2019)
PMID: 31439836 DOI: 10.1038/s41467-019-11746-0

Abstact

ProMyelocyticLeukemia (PML) protein can polymerize into a mega-Dalton nuclear assembly of 0.1-2 μm in diameter. The mechanism of PML nuclear body biogenesis remains elusive. Here, PMLRBCC is successfully purified. The gel filtration and ultracentrifugation analysis suggest a previously unrecognized sequential oligomerization mechanism via PML monomer, dimer, tetramer and N-mer. Consistently, PML B1-box structure (2.0 Å) and SAXS characterization reveal an unexpected networking by W157-, F158- and SD1-interfaces. Structure-based perturbations in these B1 interfaces not only impair oligomerization in vitro but also abolish PML sumoylation and nuclear body biogenesis in HeLaPml-/- cell. More importantly, as demonstrated by in vivo study using transgenic mice, PML-RARα (PR) F158E precludes leukemogenesis. In addition, single cell RNA sequencing analysis shows that B1 oligomerization is an important regulator in PML-RARα-driven transactivation. Altogether, these results not only define a previously unrecognized B1-box oligomerization in PML, but also highlight oligomerization as an important factor in carcinogenesis.

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Primary Citation of related structures