6IMB image
Entry Detail
PDB ID:
6IMB
Title:
Crystal structure of PDE4D complexed with a novel inhibitor
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2018-10-22
Release Date:
2019-10-23
Method Details:
Experimental Method:
Resolution:
1.55 Å
R-Value Free:
0.21
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:cAMP-specific 3',5'-cyclic phosphodiesterase 4D
Chain IDs:A, B
Chain Length:349
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Structure-Aided Identification and Optimization of Tetrahydro-isoquinolines as Novel PDE4 Inhibitors Leading to Discovery of an Effective Antipsoriasis Agent.
J.Med.Chem. 62 5579 5593 (2019)
PMID: 31099559 DOI: 10.1021/acs.jmedchem.9b00518

Abstact

Psoriasis is a common, chronic inflammatory disease characterized by abnormal skin plaques, and the effectiveness of phosphodiesterase 4 (PDE4) inhibitor to lessen the symptoms of psoriasis has been proved. Aiming to find a novel PDE4 inhibitor acting as an effective, safe, and convenient therapeutic agent, we constructed a library consisting of berberine analogues, and compound 2 with a tetrahydroisoquinoline scaffold was identified as a novel and potent hit. The structure-aided and cell-based structure-activity relationship studies on a series of tetrahydro-isoquinolines lead to efficient discovery of a qualified lead compound (16) with the high potency and selectivity, well-characterized binding mechanism, high cell permeability, good safety and pharmacokinetic profile, and impressive in vivo efficacy on antipsoriasis, in particular with a topical application. Thus, our study presents a prime example for efficient discovery of novel, potent lead compounds derived from natural products using a combination of medicinal chemistry, biochemical, biophysical, and pharmacological approaches.

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Primary Citation of related structures