6IKA image
Entry Detail
PDB ID:
6IKA
Keywords:
Title:
HIV-1 reverse transcriptase with Q151M/G112S/D113A/Y115F/F116Y/F160L/I159L:DNA:entecavir-triphosphate ternary complex
Biological Source:
PDB Version:
Deposition Date:
2018-10-15
Release Date:
2019-01-30
Method Details:
Experimental Method:
Resolution:
2.60 Å
R-Value Free:
0.23
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
H 3
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:HIV-1 RT p66 subunit
Mutations:G211S, D212A, Y214F, F215Y, Q250M, I258L, F259L, C261S, C379S
Chain IDs:A, D (auth: C)
Chain Length:557
Number of Molecules:2
Biological Source:Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Description:HIV-1 RT p51 subunit
Mutations:C749S, C867S
Chain IDs:B, E (auth: D)
Chain Length:444
Number of Molecules:2
Biological Source:Human immunodeficiency virus type 1
Polymer Type:polydeoxyribonucleotide
Description:DNA/RNA (38-MER)
Chain IDs:C (auth: E), F
Chain Length:38
Number of Molecules:2
Biological Source:synthetic construct
Primary Citation
Active-site deformation in the structure of HIV-1 RT with HBV-associated septuple amino acid substitutions rationalizes the differential susceptibility of HIV-1 and HBV against 4'-modified nucleoside RT inhibitors.
Biochem. Biophys. Res. Commun. 509 943 948 (2019)
PMID: 30648556 DOI: 10.1016/j.bbrc.2019.01.026

Abstact

Nucleoside analogue reverse transcriptase (RT) inhibitors (NRTIs) are major antiviral agents against hepatitis B virus (HBV) and human immunodeficiency virus type-1 (HIV-1). However, the notorious insoluble property of HBV RT has prevented atomic-resolution structural studies and rational anti-HBV drug design. Here, we created HIV-1 RT mutants containing HBV-mimicking sextuple or septuple amino acid substitutions at the nucleoside-binding site (N-site) and verified that these mutants retained the RT activity. The most active RT mutant, HIV-1 RT7MC, carrying Q151M/G112S/D113A/Y115F/F116Y/F160L/I159L was successfully crystallized, and its three-dimensional structure was determined in complex with DNA:dGTP/entecavir-triphosphate (ETV-TP), a potent anti-HBV guanosine analogue RT inhibitor, at a resolution of 2.43 Å and 2.60 Å, respectively. The structures reveal significant positional rearrangements of the amino acid side-chains at the N-site, elucidating the mechanism underlying the differential susceptibility of HIV-1 and HBV against recently reported 4'-modified NRTIs.

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Primary Citation of related structures