6IK4 image
Deposition Date 2018-10-14
Release Date 2019-10-16
Last Version Date 2024-10-09
Entry Detail
PDB ID:
6IK4
Keywords:
Title:
A Novel M23 Metalloprotease Pseudoalterin from Deep-sea
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.90 Å
R-Value Free:
0.17
R-Value Work:
0.14
R-Value Observed:
0.14
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Elastinolytic metalloprotease
Chain IDs:A
Chain Length:173
Number of Molecules:1
Biological Source:Pseudoalteromonas sp. CF6-2
Primary Citation
A predator-prey interaction between a marine Pseudoalteromonas sp. and Gram-positive bacteria.
Nat Commun 11 285 285 (2020)
PMID: 31941905 DOI: 10.1038/s41467-019-14133-x

Abstact

Predator-prey interactions play important roles in the cycling of marine organic matter. Here we show that a Gram-negative bacterium isolated from marine sediments (Pseudoalteromonas sp. strain CF6-2) can kill Gram-positive bacteria of diverse peptidoglycan (PG) chemotypes by secreting the metalloprotease pseudoalterin. Secretion of the enzyme requires a Type II secretion system. Pseudoalterin binds to the glycan strands of Gram positive bacterial PG and degrades the PG peptide chains, leading to cell death. The released nutrients, including PG-derived D-amino acids, can then be utilized by strain CF6-2 for growth. Pseudoalterin synthesis is induced by PG degradation products such as glycine and glycine-rich oligopeptides. Genes encoding putative pseudoalterin-like proteins are found in many other marine bacteria. This study reveals a new microbial interaction in the ocean.

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