6IJ1 image
Deposition Date 2018-10-08
Release Date 2019-09-11
Last Version Date 2024-03-27
Entry Detail
PDB ID:
6IJ1
Keywords:
Title:
Crystal structure of a protein from Actinoplanes
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.52 Å
R-Value Free:
0.17
R-Value Work:
0.15
R-Value Observed:
0.16
Space Group:
P 31 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Prenylcyclase
Gene (Uniprot):tchmY
Chain IDs:A
Chain Length:346
Number of Molecules:1
Biological Source:Actinoplanes teichomyceticus
Primary Citation
Crystal structure of TchmY from Actinoplanes teichomyceticus.
Acta Crystallogr.,Sect.F 75 570 575 (2019)
PMID: 31475923 DOI: 10.1107/S2053230X19010914

Abstact

Moenomycin-type antibiotics are phosphoglycolipids that are notable for their unique modes of action and have proven to be useful in animal nutrition. The gene clusters tchm from Actinoplanes teichomyceticus and moe from Streptomyces are among a limited number of known moenomycin-biosynthetic pathways. Most genes in tchm have counterparts in the moe cluster, except for tchmy and tchmz, the functions of which remain unknown. Sequence analysis indicates that TchmY belongs to the isoprenoid enzyme C2-like superfamily and may serve as a prenylcyclase. The enzyme was proposed to be involved in terminal cyclization of the moenocinyl chain in teichomycin, leading to the diumycinol chain of moenomycin isomers. Here, recombinant TchmY protein was expressed in Escherichia coli and its crystal structure was solved by SIRAS. Structural analysis and comparison with other prenylcyclases were performed. The overall fold of TchmY consists of an (α/α)6-barrel, and a potential substrate-binding pocket is found in the central chamber. These results should provide important information regarding the biosynthetic basis of moenomycin antibiotics.

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