6IIX image
Deposition Date 2018-10-08
Release Date 2019-10-09
Last Version Date 2023-11-22
Entry Detail
PDB ID:
6IIX
Keywords:
Title:
The crystal structure of acyltransferase mutant, orf11*-W163A, in complex with octanoyl-CoA
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.73 Å
R-Value Free:
0.21
R-Value Work:
0.18
R-Value Observed:
0.19
Space Group:
P 65
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:acyltransferase
Gene (Uniprot):tcp24
Mutations:W163A,H196A
Chain IDs:A
Chain Length:345
Number of Molecules:1
Biological Source:Actinoplanes teichomyceticus
Primary Citation
Teicoplanin Reprogrammed with the N-Acyl-Glucosamine Pharmacophore at the Penultimate Residue of Aglycone Acquires Broad-Spectrum Antimicrobial Activities Effectively Killing Gram-Positive and -Negative Pathogens.
Acs Infect Dis. 5 430 442 (2019)
PMID: 30599088 DOI: 10.1021/acsinfecdis.8b00317

Abstact

Lipoglycopeptide antibiotics, for example, teicoplanin (Tei) and A40926, are more potent than vancomycin against Gram-positive (Gram-(+)) drug-resistant pathogens, for example, methicillin-resistant Staphylococcus aureus (MRSA). To extend their therapeutic effectiveness on vancomycin-resistant S. aureus (VRSA), the biosynthetic pathway of the N-acyl glucosamine (Glc) pharmacophore at residue 4 (r4) of teicoplanin pseudoaglycone redirection to residue 6 (r6) was attempted. On the basis of crystal structures, two regioselective biocatalysts Orf2*T (a triple-mutation mutant S98A/V121A/F193Y) and Orf11*S (a single-mutation mutant W163A) were engineered, allowing them to act on GlcNAc at r6. New analogs thereby made show marked antimicrobial activity against MRSA and VRSA by 2-3 orders of magnitude better than teicoplanin and vancomycin. The lipid side chain of the Tei-analogs armed with a terminal mono- or diguanidino group extends the antimicrobial specificity from Gram-(+) to Gram-negative (Gram-(-)), comparable to that of kanamycin. In addition to low cytotoxicity and high safety, the Tei analogs exhibit new modes of action as a result of resensitization of VRSA and Acinetobacter baumannii. The redirection of the biosynthetic pathway for the N-acyl-Glc pharmacophore from r4 to r6 bodes well for large-scale production of selected r6,Tei congeners in an environmentally friendly synthetic biology approach.

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Primary Citation of related structures