6IHC image
Deposition Date 2018-09-29
Release Date 2019-04-10
Last Version Date 2024-11-06
Entry Detail
PDB ID:
6IHC
Title:
Crystal structure of (3R)-Hydroxyacyl-Acyl Carrier Protein Dehydratase(FabZ) Y100A mutant in complex with holo-ACP from Helicobacter pylori
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.40 Å
R-Value Free:
0.21
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ
Chain IDs:A, B, C, D, E, F
Chain Length:153
Number of Molecules:6
Biological Source:Helicobacter pylori
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:holo-form acyl carrier protein (holo-ACP)
Gene (Uniprot):acpP
Chain IDs:G
Chain Length:65
Number of Molecules:1
Biological Source:Helicobacter pylori
Primary Citation
A back-door Phenylalanine coordinates the stepwise hexameric loading of acyl carrier protein by the fatty acid biosynthesis enzyme beta-hydroxyacyl-acyl carrier protein dehydratase (FabZ).
Int. J. Biol. Macromol. 128 5 11 (2019)
PMID: 30677439 DOI: 10.1016/j.ijbiomac.2019.01.094

Abstact

The fatty acid biosynthesis pathway (FAS) was a fundamental procedure to generate a diversity of lipid components for cellular metabolism in bacteria, while the mechanism of substrate recognition remains unclear. The β-hydroxyacyl-acyl carrier protein dehydratase hexamer (FabZ) is an essential module in the elongation cycle of type-II FAS, catalyzing the dehydration of β-hydroxyacyl-lipid substrate carried by the holo form acyl carrier protein (holo-ACP). We previously elucidated an alternating seesaw-like ACP loading manner within a FabZ dimer subunits, mediated by a front-door residue Tyrosine (Tyr100). Here, we demonstrated that a back-door residue Phenylalanine (Phe83) of FabZ regulates the stepwise hexameric loading of ACP. Our finding represents clues as to the dynamic ACP recognition and catalysis mechanism of dehydratase in fatty acid biosynthesis, and provides critical information for developing antimicrobials targeting the dehydratase module in fatty acid biosynthesis pathway.

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Primary Citation of related structures