6IG8 image
Entry Detail
PDB ID:
6IG8
Title:
Crystal structure of CSF-1R kinase domain with a small molecular inhibitor, JTE-952
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2018-09-25
Release Date:
2019-08-07
Method Details:
Experimental Method:
Resolution:
1.80 Å
R-Value Free:
0.19
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
P 43 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Macrophage colony-stimulating factor 1 receptor
Mutations:S688A
Chain IDs:A
Chain Length:324
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Discovery of a novel azetidine scaffold for colony stimulating factor-1 receptor (CSF-1R) Type II inhibitors by the use of docking models.
Bioorg.Med.Chem.Lett. 29 115 118 (2019)
PMID: 30442420 DOI: 10.1016/j.bmcl.2018.10.051

Abstact

We report the discovery of a novel azetidine scaffold for colony stimulating factor-1 receptor (CSF-1R) Type II inhibitors by using a structure-based drug design (SBDD) based on a docking model. The work leads to the representative compound 4a with high CSF-1R inhibitory activity (IC50 = 9.1 nM). The obtained crystal structure of an azetidine compound with CSF-1R, which matched our predicted docking model, demonstrates that the azetidine compounds bind to the DFG-out conformation of the protein as a Type II inhibitor.

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Primary Citation of related structures