6IG7 image
Deposition Date 2018-09-25
Release Date 2018-11-07
Last Version Date 2023-11-22
Entry Detail
PDB ID:
6IG7
Keywords:
Title:
Crystal structure of thermolysin delivered in polyacrylamide using x-ray free electron laser
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.80 Å
R-Value Free:
0.20
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 61 2 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Thermolysin
Gene (Uniprot):npr
Chain IDs:A
Chain Length:316
Number of Molecules:1
Biological Source:Bacillus thermoproteolyticus
Primary Citation
Polyacrylamide injection matrix for serial femtosecond crystallography.
Sci Rep 9 2525 2525 (2019)
PMID: 30792457 DOI: 10.1038/s41598-019-39020-9

Abstact

Serial femtosecond crystallography (SFX) provides opportunities to observe the dynamics of macromolecules without causing radiation damage at room temperature. Although SFX provides a biologically more reliable crystal structure than provided by the existing synchrotron sources, there are limitations due to the consumption of many crystal samples. A viscous medium as a carrier matrix reduces the flow rate of the crystal sample from the injector, thereby dramatically reducing sample consumption. However, the currently available media cannot be applied to specific crystal samples owing to reactions between the viscous medium and crystal sample. The discovery and characterisation of a new delivery medium for SFX can further expand its use. Herein, we report the preparation of a polyacrylamide (PAM) injection matrix to determine the crystal structure with an X-ray free-electron laser. We obtained 11,936 and 22,213 indexed images using 0.5 mg lysozyme and 1.0 mg thermolysin, respectively. We determined the crystal structures of lysozyme and thermolysin delivered in PAM at 1.7 Å and 1.8 Å resolutions. The maximum background scattering from PAM was lower than monoolein, a commonly used viscous medium. Our results show that PAM can be used as a sample delivery media in SFX studies.

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