6IFE image
Deposition Date 2018-09-20
Release Date 2019-03-13
Last Version Date 2023-11-22
Entry Detail
PDB ID:
6IFE
Keywords:
Title:
A Glycoside Hydrolase Family 43 beta-Xylosidase
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.80 Å
R-Value Free:
0.19
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Beta-xylosidase
Gene (Uniprot):B4107_1875
Chain IDs:A, B
Chain Length:553
Number of Molecules:2
Biological Source:Bacillus pumilus
Ligand Molecules
Primary Citation
Biochemical and structural properties of a low-temperature-active glycoside hydrolase family 43 beta-xylosidase: Activity and instability at high neutral salt concentrations.
Food Chem 301 125266 125266 (2019)
PMID: 31387037 DOI: 10.1016/j.foodchem.2019.125266

Abstact

β-Xylosidase, of the glycoside hydrolase family 43 from Bacillus sp. HJ14, was expressed in Escherichia coli. Recombinant β-xylosidase (rHJ14GH43) exhibited maximum activity at 25 °C, approximately 15, 45, and 88% of maximum activity at 0, 10, and 20 °C, respectively, and poor stability at temperatures over 20 °C. rHJ14GH43 showed moderate or high activity, but poor stability, in NaCl, KCl, NaNO3, KNO3, Na2SO4, and (NH4)2SO4 at concentrations from 3.0 to 30.0% (w/v). The crystal structure of rHJ14GH43 was resolved and showed higher structural flexibility due to fewer salt bridges and hydrogen bonds compared to mesophilic and thermophilic β-xylosidases. High structural flexibility is presumed to be a key factor for catalytic adaptations to low temperatures and high salt concentrations. Approximately one-third of the surface of rHJ14GH43 is positively charged, which may be the primary factor responsible for poor stability in high neutral salt environments.

Legend

Protein

Chemical

Disease

Primary Citation of related structures