6IFB image
Deposition Date 2018-09-19
Release Date 2019-09-25
Last Version Date 2024-03-27
Entry Detail
PDB ID:
6IFB
Title:
Structure of rhamnose bound beta-trefoil lectin from Entamoeba histolytica
Biological Source:
Method Details:
Experimental Method:
Resolution:
1.37 Å
R-Value Free:
0.17
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:lectin
Chain IDs:A, B
Chain Length:135
Number of Molecules:2
Biological Source:Entamoeba histolytica HM-1:IMSS
Primary Citation
Crystal structures of a beta-trefoil lectin from Entamoeba histolytica in monomeric and a novel disulfide bond-mediated dimeric forms.
Glycobiology 30 474 488 (2020)
PMID: 31967310 DOI: 10.1093/glycob/cwaa001

Abstact

β-Trefoil lectins are galactose/N-acetyl galactosamine specific lectins, which are widely distributed across all kingdoms of life and are known to perform several important functions. However, there is no report available on the characterization of these lectins from protozoans. We have performed structural and biophysical studies on a β-trefoil lectin from Entamoeba histolytica (EntTref), which exists as a mixture of monomers and dimers in solution. Further, we have determined the affinities of EntTref for rhamnose, galactose and different galactose-linked sugars. We obtained the crystal structure of EntTref in a sugar-free form (EntTref_apo) and a rhamnose-bound form (EntTref_rham). A novel Cys residue-mediated dimerization was revealed in the crystal structure of EntTref_apo while the structure of EntTref_rham provided the structural basis for the recognition of rhamnose by a β-trefoil lectin for the first time. To the best of our knowledge, this is the only report of the structural, functional and biophysical characterization of a β-trefoil lectin from a protozoan source and the first report of Cys-mediated dimerization in this class of lectins.

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