6IF4 image
Deposition Date 2018-09-18
Release Date 2019-09-18
Last Version Date 2023-11-22
Entry Detail
PDB ID:
6IF4
Title:
Crystal structure of Tbtudor
Biological Source:
Method Details:
Experimental Method:
Resolution:
1.93 Å
R-Value Free:
0.24
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Histone acetyltransferase
Gene (Uniprot):Tb07.26A24.750
Chain IDs:A (auth: B), B (auth: A)
Chain Length:71
Number of Molecules:2
Biological Source:Trypanosoma brucei brucei (strain 927/4 GUTat10.1)
Primary Citation
Crystal structure of TbEsa1 presumed Tudor domain from Trypanosoma brucei.
J.Struct.Biol. 209 107406 107406 (2020)
PMID: 31747559 DOI: 10.1016/j.jsb.2019.107406

Abstact

The essential SAS2-related acetyltransferase 1 (Esa1), as a acetyltransferase of MYST family, is indispensable for the cell cycle and transcriptional regulation. The Tudor domain consists of 60 amino acids and belongs to the Royal family, which serves as a module interacting with methylated histone and/or DNA. Although Tudor domain has been widely studied in higher eukaryotes, its structure and function remain unclear in Trypanosoma brucei (T. brucei), a protozoan unicellular parasite causing sleeping sickness in human and nagana in cattle in sub-Saharan Africa. Here, we determined a high-resolution structure of TbEsa1 presumed Tudor domain from T. brucei by X-ray crystallography. TbEsa1 Tudor domain adopts a conserved Tudor-like fold, which is comprised of a five-stranded β-barrel surrounded by two short α-helices. Furthermore, we revealed a non-specific DNA binding pattern of TbEsa1 Tudor domain. However, TbEsa1 Tudor domain showed no methyl-histone binding ability, due to the absence of key aromatic residues forming a conserved aromatic cage.

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