6IDW image
Deposition Date 2018-09-11
Release Date 2018-10-17
Last Version Date 2024-11-06
Entry Detail
PDB ID:
6IDW
Keywords:
Title:
GH6 Orpinomyces sp. Y102 enzyme
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.78 Å
R-Value Free:
0.25
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Glucanase
Gene (Uniprot):cbhC7
Chain IDs:A, B, C, D
Chain Length:322
Number of Molecules:4
Biological Source:Orpinomyces sp. Y102
Peptide-like Molecules
PRD_900005
Primary Citation
Crystal structures of the GH6 Orpinomyces sp. Y102 CelC7 enzyme with exo and endo activity and its complex with cellobiose.
Acta Crystallogr D Struct Biol 75 1138 1147 (2019)
PMID: 31793907 DOI: 10.1107/S2059798319013597

Abstact

The catalytic domain (residues 128-449) of the Orpinomyces sp. Y102 CelC7 enzyme (Orp CelC7) exhibits cellobiohydrolase and cellotriohydrolase activities. Crystal structures of Orp CelC7 and its cellobiose-bound complex have been solved at resolutions of 1.80 and 2.78 Å, respectively. Cellobiose occupies subsites +1 and +2 within the active site of Orp CelC7 and forms hydrogen bonds to two key residues: Asp248 and Asp409. Furthermore, its substrate-binding sites have both tunnel-like and open-cleft conformations, suggesting that the glycoside hydrolase family 6 (GH6) Orp CelC7 enzyme may perform enzymatic hydrolysis in the same way as endoglucanases and cellobiohydrolases. LC-MS/MS analysis revealed cellobiose (major) and cellotriose (minor) to be the respective products of endo and exo activity of the GH6 Orp CelC7.

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Primary Citation of related structures