6IDL image
Deposition Date 2018-09-10
Release Date 2018-12-12
Last Version Date 2024-03-27
Entry Detail
PDB ID:
6IDL
Keywords:
Title:
Cryo-EM structure of Immature Dengue virus serotype 3 in complex with human antibody 1H10 Fab at pH 5.0 (Class II particle)
Biological Source:
Source Organism:
Dengue virus 3 (Taxon ID: 11069)
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
25.00 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Envelope protein
Chain IDs:A, B, C
Chain Length:493
Number of Molecules:3
Biological Source:Dengue virus 3
Polymer Type:polypeptide(L)
Molecule:Premembrane protein
Chain IDs:D (auth: E), E (auth: F)
Chain Length:166
Number of Molecules:2
Biological Source:Dengue virus 3
Polymer Type:polypeptide(L)
Molecule:Fab 1H10 heavy chain (V-region)
Chain IDs:F (auth: I), H (auth: M)
Chain Length:137
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Fab 1H10 light chain (V-region)
Chain IDs:G (auth: J), I (auth: N)
Chain Length:116
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Mechanism of Enhanced Immature Dengue Virus Attachment to Endosomal Membrane Induced by prM Antibody.
Structure 27 253 267.e8 (2019)
PMID: 30471923 DOI: 10.1016/j.str.2018.10.009

Abstact

Dengue virus (DENV) particles are released from cells in different maturation states. Fully immature DENV (immDENV) is generally non-infectious, but can become infectious when complexed with anti-precursor membrane (prM) protein antibodies. It is unknown how anti-prM antibody-coated particles can undergo membrane fusion since the prM caps the envelope (E) protein fusion loop. Here, we determined cryoelectron microscopy (cryo-EM) maps of the immDENV:anti-prM complex at different pH values, mimicking the extracellular (pH 8.0) or endosomal (pH 5.0) environments. At pH 5.0, there are two structural classes with fewer antibodies bound than at pH 8.0. These classes may represent different maturation states. Molecular simulations, together with the measured high-affinity pr:antibody interaction (versus the weak pr:E interaction) and also the low pH cryo-EM structures, suggest how antibody:pr complex can dislodge from the E protein at low pH. This exposes the E protein fusion loop enhancing virus interaction with endosomes.

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Primary Citation of related structures