6IAR image
Deposition Date 2018-11-27
Release Date 2019-01-23
Last Version Date 2024-05-15
Entry Detail
PDB ID:
6IAR
Title:
Tricyclic indazoles a novel class of selective estrogen receptor degrader antagonists
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
1.84 Å
R-Value Free:
0.23
R-Value Work:
0.18
R-Value Observed:
0.19
Space Group:
P 65 2 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Estrogen receptor
Gene (Uniprot):ESR1
Chain IDs:A
Chain Length:237
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Tricyclic Indazoles-A Novel Class of Selective Estrogen Receptor Degrader Antagonists.
J.Med.Chem. 62 1593 1608 (2019)
PMID: 30640465 DOI: 10.1021/acs.jmedchem.8b01837

Abstact

Herein, we report the identification and synthesis of a series of tricyclic indazoles as a novel class of selective estrogen receptor degrader antagonists. Replacement of a phenol, present in our previously reported tetrahydroisoquinoline scaffold, with an indazole group led to the removal of a reactive metabolite signal in an in vitro glutathione trapping assay. Further optimization, guided by X-ray crystal structures and NMR conformational work, varied the alkyl side chain and pendant aryl group and resulted in compounds with low turnover in human hepatocytes and enhanced chemical stability. Compound 9 was profiled as a representative of the series in terms of pharmacology and demonstrated the desired estrogen receptor α degrader-antagonist profile and demonstrated activity in a xenograft model of breast cancer.

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Primary Citation of related structures
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