6I8Z image
Entry Detail
PDB ID:
6I8Z
Keywords:
Title:
Crystal structure of PTK2 in complex with BI-4464.
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2018-11-21
Release Date:
2019-02-20
Method Details:
Experimental Method:
Resolution:
1.99 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Focal adhesion kinase 1
Chain IDs:A
Chain Length:281
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Highly Selective PTK2 Proteolysis Targeting Chimeras to Probe Focal Adhesion Kinase Scaffolding Functions.
J.Med.Chem. 62 2508 2520 (2019)
PMID: 30739444 DOI: 10.1021/acs.jmedchem.8b01826

Abstact

Focal adhesion tyrosine kinase (PTK2) is often overexpressed in human hepatocellular carcinoma (HCC), and several reports have linked PTK2 depletion and/or pharmacological inhibition to reduced tumorigenicity. However, the clinical relevance of targeting PTK2 still remains to be proven. Here, we present two highly selective and functional PTK2 proteolysis-targeting chimeras utilizing von Hippel-Lindau and cereblon ligands to hijack E3 ligases for PTK2 degradation. BI-3663 (cereblon-based) degrades PTK2 with a median DC50 of 30 nM to >80% across a panel of 11 HCC cell lines. Despite effective PTK2 degradation, these compounds did not phenocopy the reported antiproliferative effects of PTK2 depletion in any of the cell lines tested. By disclosing these compounds, we hope to provide valuable tools for the study of PTK2 degradation across different biological systems.

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Primary Citation of related structures