6I60 image
Deposition Date 2018-11-15
Release Date 2019-02-06
Last Version Date 2024-01-24
Entry Detail
PDB ID:
6I60
Keywords:
Title:
Structure of alpha-L-rhamnosidase from Dictyoglumus thermophilum
Biological Source:
Method Details:
Experimental Method:
Resolution:
2.74 Å
R-Value Free:
0.27
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Alpha-rhamnosidase
Gene (Uniprot):DICTH_0289
Chain IDs:A, B
Chain Length:944
Number of Molecules:2
Biological Source:Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12)
Primary Citation
Biochemical Characterization of the alpha-l-RhamnosidaseDtRha fromDictyoglomus thermophilum: Application to the Selective Derhamnosylation of Natural Flavonoids.
Acs Omega 4 1916 1922 (2019)
PMID: 31459445 DOI: 10.1021/acsomega.8b03186

Abstact

α-l-Rhamnosidases are catalysts of industrial tremendous interest, but their uses are still somewhat limited by their poor thermal stabilities and selectivities. The thermophilic DtRha from Dictyoglomus thermophilum was cloned, and the recombinant protein was easily purified to homogeneity to afford 4.5 mg/L culture of biocatalyst. Michaelis-Menten parameters demonstrated it to be fully specific for α-l-rhamnose. Most significantly, DtRha demonstrated to have a stronger preference for α(1 → 2) linkage rather than α(1 → 6) linkage when removing rhamnosyl moiety from natural flavonoids. This selectivity was fully explained by the difference of binding of the corresponding substrates in the active site of the protein.

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Primary Citation of related structures