6I50 image
Deposition Date 2018-11-12
Release Date 2019-08-14
Last Version Date 2024-11-06
Entry Detail
PDB ID:
6I50
Keywords:
Title:
Structure of Eiger TNF from S. frugiperda
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.69 Å
R-Value Free:
0.18
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
H 3
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:SFRICE_029225
Gene (Uniprot):SFRICE_029225
Chain IDs:A
Chain Length:170
Number of Molecules:1
Biological Source:Spodoptera frugiperda
Primary Citation
High-resolution crystal structure of arthropod Eiger TNF suggests a mode of receptor engagement and altered surface charge within endosomes.
Commun Biol 2 293 293 (2019)
PMID: 31396573 DOI: 10.1038/s42003-019-0541-0

Abstact

The tumour necrosis factor alpha (TNFα) superfamily of proteins are critical in numerous biological processes, such as in development and immunity. Eiger is the sole TNFα member described in arthropods such as in the important model organism Drosophila. To date there are no structural data on any Eiger protein. Here we present the structure of the TNF domain of Eiger from the fall armyworm Spodoptera frugiperda (SfEiger) to 1.7 Å from a serendipitously obtained crystal without prior knowledge of the protein sequence. Our structure confirms that canonical trimerization is conserved from ancestral TNFs and points towards a mode of receptor engagement. Furthermore, we observe numerous surface histidines on SfEiger, potentially acting as pH switches following internalization into endosomes. Our data contributes to the genome annotation of S. frugiperda, a voracious agricultural pest, and can serve as a basis for future structure-function investigations of the TNF system in related arthropods such as Drosophila.

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