6I3T image
Entry Detail
PDB ID:
6I3T
Title:
Crystal structure of murine neuroglobin bound to CO at 40 K.
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2018-11-07
Release Date:
2019-09-11
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.22
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
H 3 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Neuroglobin
Chain IDs:A
Chain Length:150
Number of Molecules:1
Biological Source:Mus musculus
Primary Citation
Ligand pathways in neuroglobin revealed by low-temperature photodissociation and docking experiments.
Iucrj 6 832 842 (2019)
PMID: 31576217 DOI: 10.1107/S2052252519008157

Abstact

A combined biophysical approach was applied to map gas-docking sites within murine neuroglobin (Ngb), revealing snapshots of events that might govern activity and dynamics in this unique hexacoordinate globin, which is most likely to be involved in gas-sensing in the central nervous system and for which a precise mechanism of action remains to be elucidated. The application of UV-visible microspectroscopy in crystallo, solution X-ray absorption near-edge spectroscopy and X-ray diffraction experiments at 15-40 K provided the structural characterization of an Ngb photolytic intermediate by cryo-trapping and allowed direct observation of the relocation of carbon monoxide within the distal heme pocket after photodissociation. Moreover, X-ray diffraction at 100 K under a high pressure of dioxygen, a physiological ligand of Ngb, unravelled the existence of a storage site for O2 in Ngb which coincides with Xe-III, a previously described docking site for xenon or krypton. Notably, no other secondary sites were observed under our experimental conditions.

Legend

Protein

Chemical

Disease

Primary Citation of related structures