6I3M image
Deposition Date 2018-11-06
Release Date 2019-05-22
Last Version Date 2024-11-06
Entry Detail
PDB ID:
6I3M
Keywords:
Title:
eIF2B:eIF2 complex, phosphorylated on eIF2 alpha serine 52.
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.93 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Translation initiation factor eIF-2B subunit alpha
Gene (Uniprot):GCN3
Chain IDs:A, H (auth: B)
Chain Length:305
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae S288C
Polymer Type:polypeptide(L)
Molecule:Translation initiation factor eIF-2B subunit delta
Gene (Uniprot):GCD2
Chain IDs:B (auth: C), C (auth: D)
Chain Length:651
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae S288C
Polymer Type:polypeptide(L)
Molecule:Translation initiation factor eIF-2B subunit beta
Gene (Uniprot):GCD7
Chain IDs:D (auth: E), J (auth: F)
Chain Length:381
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae S288C
Polymer Type:polypeptide(L)
Molecule:Translation initiation factor eIF-2B subunit epsilon
Gene (Uniprot):GCD6
Chain IDs:E (auth: G), I (auth: H)
Chain Length:712
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae S288C
Polymer Type:polypeptide(L)
Molecule:Translation initiation factor eIF-2B subunit gamma
Gene (Uniprot):GCD1
Chain IDs:F (auth: I), G (auth: J)
Chain Length:578
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae S288C
Polymer Type:polypeptide(L)
Molecule:Eukaryotic translation initiation factor 2 subunit alpha
Gene (Uniprot):SUI2
Mutations:serine 52 to SEP
Chain IDs:K, N (auth: L)
Chain Length:304
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae S288C
Polymer Type:polypeptide(L)
Molecule:Eukaryotic translation initiation factor 2 subunit beta
Gene (Uniprot):SUI3
Chain IDs:L (auth: M), O (auth: N)
Chain Length:285
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae S288C
Polymer Type:polypeptide(L)
Molecule:Eukaryotic translation initiation factor 2 subunit gamma
Gene (Uniprot):GCD11
Chain IDs:M (auth: O), P
Chain Length:527
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae S288C
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
SEP K SER modified residue
Ligand Molecules
Primary Citation
The structural basis of translational control by eIF2 phosphorylation.
Nat Commun 10 2136 2136 (2019)
PMID: 31086188 DOI: 10.1038/s41467-019-10167-3

Abstact

Protein synthesis in eukaryotes is controlled by signals and stresses via a common pathway, called the integrated stress response (ISR). Phosphorylation of the translation initiation factor eIF2 alpha at a conserved serine residue mediates translational control at the ISR core. To provide insight into the mechanism of translational control we have determined the structures of eIF2 both in phosphorylated and unphosphorylated forms bound with its nucleotide exchange factor eIF2B by electron cryomicroscopy. The structures reveal that eIF2 undergoes large rearrangements to promote binding of eIF2α to the regulatory core of eIF2B comprised of the eIF2B alpha, beta and delta subunits. Only minor differences are observed between eIF2 and eIF2αP binding to eIF2B, suggesting that the higher affinity of eIF2αP for eIF2B drives translational control. We present a model for controlled nucleotide exchange and initiator tRNA binding to the eIF2/eIF2B complex.

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Primary Citation of related structures