6I3K image
Entry Detail
PDB ID:
6I3K
Keywords:
Title:
Bilirubin oxidase from Myrothecium verrucaria, mutant W396A in complex with ferricyanide
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2018-11-06
Release Date:
2019-10-02
Method Details:
Experimental Method:
Resolution:
1.60 Å
R-Value Free:
0.15
R-Value Work:
0.13
R-Value Observed:
0.13
Space Group:
F 2 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Bilirubin oxidase
Mutations:W396A
Chain IDs:A, B
Chain Length:534
Number of Molecules:2
Biological Source:Albifimbria verrucaria
Primary Citation
Trp-His covalent adduct in bilirubin oxidase is crucial for effective bilirubin binding but has a minor role in electron transfer.
Sci Rep 9 13700 13700 (2019)
PMID: 31548583 DOI: 10.1038/s41598-019-50105-3

Abstact

Unlike any protein studied so far, the active site of bilirubin oxidase from Myrothecium verrucaria contains a unique type of covalent link between tryptophan and histidine side chains. The role of this post-translational modification in substrate binding and oxidation is not sufficiently understood. Our structural and mutational studies provide evidence that this Trp396-His398 adduct modifies T1 copper coordination and is an important part of the substrate binding and oxidation site. The presence of the adduct is crucial for oxidation of substituted phenols and it substantially influences the rate of oxidation of bilirubin. Additionally, we bring the first structure of bilirubin oxidase in complex with one of its products, ferricyanide ion, interacting with the modified tryptophan side chain, Arg356 and the active site-forming loop 393-398. The results imply that structurally and chemically distinct types of substrates, including bilirubin, utilize the Trp-His adduct mainly for binding and to a smaller extent for electron transfer.

Legend

Protein

Chemical

Disease

Primary Citation of related structures