6I38 image
Deposition Date 2018-11-05
Release Date 2019-11-20
Last Version Date 2024-01-24
Entry Detail
PDB ID:
6I38
Keywords:
Title:
Crystal structure of nv2Pizza6-AYW, a circularly permuted designer protein
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.58 Å
R-Value Free:
0.20
R-Value Work:
0.16
R-Value Observed:
0.17
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:nv2Pizza6-AYW
Chain IDs:A
Chain Length:255
Number of Molecules:1
Biological Source:synthetic construct
Primary Citation
Influence of circular permutations on the structure and stability of a six-fold circular symmetric designer protein.
Protein Sci. ? ? ? (2020)
PMID: 33006397 DOI: 10.1002/pro.3961

Abstact

The β-propeller fold is adopted by a sequentially diverse family of repeat proteins with apparent rotational symmetry. While the structure is mostly stabilized by hydrophobic interactions, an additional stabilization is provided by hydrogen bonds between the N-and C-termini, which are almost invariably part of the same β-sheet. This feature is often referred to as the "Velcro" closure. The positioning of the termini within a blade is variable and depends on the protein family. In order to investigate the influence of this location on protein structure, folding and stability, we created different circular permutants, and a circularized version, of the designer propeller protein named Pizza. This protein is perfectly symmetrical, possessing six identical repeats. While all mutants adopt the same structure, the proteins lacking the "Velcro" closure were found to be significantly less resistant to thermal and chemical denaturation. This could explain why such proteins are rarely observed in nature. Interestingly the most common "Velcro" configuration for this protein family was not the most stable among the Pizza variants tested. The circularized version shows dramatically improved stability, which could have implications for future applications.

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