6HYU image
Deposition Date 2018-10-22
Release Date 2019-08-28
Last Version Date 2024-05-15
Entry Detail
PDB ID:
6HYU
Title:
Crystal structure of DHX8 helicase bound to single stranded poly-adenine RNA
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.22 Å
R-Value Free:
0.28
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 21 2 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ATP-dependent RNA helicase DHX8
Gene (Uniprot):DHX8
Chain IDs:A, C
Chain Length:673
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polyribonucleotide
Molecule:RNA (5'-R(*AP*AP*AP*AP*AP*A)-3')
Chain IDs:B
Chain Length:6
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polyribonucleotide
Molecule:RNA (5'-R(*A*AP*A)-3')
Chain IDs:D
Chain Length:3
Number of Molecules:1
Biological Source:synthetic construct
Ligand Molecules
Primary Citation
Structural and functional characterisation of human RNA helicase DHX8 provides insights into the mechanism of RNA-stimulated ADP release.
Biochem.J. 476 2521 2543 (2019)
PMID: 31409651 DOI: 10.1042/BCJ20190383

Abstact

DHX8 is a crucial DEAH-box RNA helicase involved in splicing and required for the release of mature mRNA from the spliceosome. Here, we report the biochemical characterisation of full-length human DHX8 and the catalytically active helicase core DHX8Δ547, alongside crystal structures of DHX8Δ547 bound to ADP and a structure of DHX8Δ547 bound to poly(A)6 single-strand RNA. Our results reveal that DHX8 has an in vitro binding preference for adenine-rich RNA and that RNA binding triggers the release of ADP through significant conformational flexibility in the conserved DEAH-, P-loop and hook-turn motifs. We demonstrate the importance of R620 and both the hook-turn and hook-loop regions for DHX8 helicase activity and propose that the hook-turn acts as a gatekeeper to regulate the directional movement of the 3' end of RNA through the RNA-binding channel. This study provides an in-depth understanding of the activity of DHX8 and contributes insights into the RNA-unwinding mechanisms of the DEAH-box helicase family.

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Primary Citation of related structures