6HXX image
Entry Detail
PDB ID:
6HXX
EMDB ID:
Keywords:
Title:
Potato virus Y
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2018-10-18
Release Date:
2019-08-07
Method Details:
Experimental Method:
Resolution:
3.40 Å
Aggregation State:
HELICAL ARRAY
Reconstruction Method:
HELICAL
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Coat protein
Chain IDs:A (auth: AA), C (auth: AB), E (auth: AC), G (auth: AD), I (auth: AE), K (auth: AF), M (auth: AG), O (auth: AH), Q (auth: AI), S (auth: AJ), U (auth: AK), W (auth: AL), Y (auth: AM), AA (auth: AN), CA (auth: AO), EA (auth: AP), GA (auth: AQ), IA (auth: AR), KA (auth: AS), MA (auth: AT), OA (auth: AU), QA (auth: AV), SA (auth: AW), UA (auth: AX), WA (auth: AY), YA (auth: AZ), AB (auth: BA), CB (auth: BB), EB (auth: BC), GB (auth: BD), IB (auth: BE), KB (auth: BF), MB (auth: BG), OB (auth: BH), QB (auth: BI)
Chain Length:267
Number of Molecules:35
Biological Source:Potato virus Y
Polymer Type:polyribonucleotide
Description:RNA (5'-R(P*UP*UP*UP*UP*U)-3')
Chain IDs:B (auth: Aa), D (auth: Ab), F (auth: Ac), H (auth: Ad), J (auth: Ae), L (auth: Af), N (auth: Ag), P (auth: Ah), R (auth: Ai), T (auth: Aj), V (auth: Ak), X (auth: Al), Z (auth: Am), BA (auth: An), DA (auth: Ao), FA (auth: Ap), HA (auth: Aq), JA (auth: Ar), LA (auth: As), NA (auth: At), PA (auth: Au), RA (auth: Av), TA (auth: Aw), VA (auth: Ax), XA (auth: Ay), ZA (auth: Az), BB (auth: Ba), DB (auth: Bb), FB (auth: Bc), HB (auth: Bd), JB (auth: Be), LB (auth: Bf), NB (auth: Bg), PB (auth: Bh), RB (auth: Bi)
Chain Length:267
Number of Molecules:35
Biological Source:Potato virus Y
Ligand Molecules
Primary Citation
Structural basis for the multitasking nature of the potato virus Y coat protein.
Sci Adv 5 eaaw3808 eaaw3808 (2019)
PMID: 31328164 DOI: 10.1126/sciadv.aaw3808

Abstact

Potato virus Y (PVY) is among the most economically important plant pathogens. Using cryoelectron microscopy, we determined the near-atomic structure of PVY's flexuous virions, revealing a previously unknown lumenal interplay between extended carboxyl-terminal regions of the coat protein units and viral RNA. RNA-coat protein interactions are crucial for the helical configuration and stability of the virion, as revealed by the unique near-atomic structure of RNA-free virus-like particles. The structures offer the first evidence for plasticity of the coat protein's amino- and carboxyl-terminal regions. Together with mutational analysis and in planta experiments, we show their crucial role in PVY infectivity and explain the ability of the coat protein to perform multiple biological tasks. Moreover, the high modularity of PVY virus-like particles suggests their potential as a new molecular scaffold for nanobiotechnological applications.

Legend

Protein

Chemical

Disease

Primary Citation of related structures