6HWH image
Deposition Date 2018-10-12
Release Date 2018-11-07
Last Version Date 2025-04-09
Entry Detail
PDB ID:
6HWH
Title:
Structure of a functional obligate respiratory supercomplex from Mycobacterium smegmatis
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.30 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Ubiquinol-cytochrome c reductase iron-sulfur subunit
Gene (Uniprot):MSMEG_4262
Chain IDs:A, N (auth: B)
Chain Length:408
Number of Molecules:2
Biological Source:Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)
Polymer Type:polypeptide(L)
Molecule:Co-purified unknown transmembrane helices built as polyALA
Chain IDs:B (auth: G), O (auth: C)
Chain Length:74
Number of Molecules:2
Biological Source:Mycobacterium smegmatis MC2 155
Polymer Type:polypeptide(L)
Molecule:Co-purified unknown transmembrane helices built as polyALA
Chain IDs:C (auth: H), P (auth: D)
Chain Length:65
Number of Molecules:2
Biological Source:Mycobacterium smegmatis MC2 155
Polymer Type:polypeptide(L)
Molecule:Co-purified unknown peptide built as polyALA
Chain IDs:D (auth: I), Q (auth: E)
Chain Length:20
Number of Molecules:2
Biological Source:Mycobacterium smegmatis MC2 155
Polymer Type:polypeptide(L)
Molecule:Co-purified unknown peptide built as polyALA
Chain IDs:E (auth: J), R (auth: F)
Chain Length:35
Number of Molecules:2
Biological Source:Mycobacterium smegmatis MC2 155
Polymer Type:polypeptide(L)
Molecule:Cytochrome bc1 complex cytochrome c subunit
Gene (Uniprot):MSMEG_4261
Chain IDs:F (auth: M), S (auth: K), AA (auth: i), BA (auth: j)
Chain Length:268
Number of Molecules:4
Biological Source:Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)
Polymer Type:polypeptide(L)
Molecule:Cytochrome c oxidase subunit 2
Gene (Uniprot):MSMEG_4268
Chain IDs:G (auth: P), T (auth: L)
Chain Length:341
Number of Molecules:2
Biological Source:Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)
Polymer Type:polypeptide(L)
Molecule:MSMEG_4693
Gene (Uniprot):MSMEG_4693
Chain IDs:H (auth: R), U (auth: N)
Chain Length:79
Number of Molecules:2
Biological Source:Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)
Polymer Type:polypeptide(L)
Molecule:Uncharacterized protein MSMEG_4692/MSMEI_4575
Gene (Uniprot):MSMEG_4692, MSMEI_4575
Chain IDs:I (auth: T), V (auth: O)
Chain Length:157
Number of Molecules:2
Biological Source:Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)
Polymer Type:polypeptide(L)
Molecule:Cytochrome c oxidase subunit 1
Gene (Uniprot):ctaD
Chain IDs:J (auth: V), W (auth: Q)
Chain Length:583
Number of Molecules:2
Biological Source:Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)
Polymer Type:polypeptide(L)
Molecule:Cytochrome c oxidase polypeptide 4
Gene (Uniprot):MSMEG_4267
Chain IDs:K (auth: X), X (auth: S)
Chain Length:139
Number of Molecules:2
Biological Source:Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)
Polymer Type:polypeptide(L)
Molecule:Cytochrome c oxidase subunit 3
Gene (Uniprot):MSMEG_4260
Chain IDs:L (auth: Z), Y (auth: W)
Chain Length:203
Number of Molecules:2
Biological Source:Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)
Polymer Type:polypeptide(L)
Molecule:Ubiquinol-cytochrome C reductase QcrB
Chain IDs:M (auth: b), Z (auth: Y)
Chain Length:554
Number of Molecules:2
Biological Source:Mycobacterium smegmatis MC2 155
Primary Citation
Structure of a functional obligate complex III2IV2respiratory supercomplex from Mycobacterium smegmatis.
Nat. Struct. Mol. Biol. 25 1128 1136 (2018)
PMID: 30518849 DOI: 10.1038/s41594-018-0160-3

Abstact

In the mycobacterial electron-transport chain, respiratory complex III passes electrons from menaquinol to complex IV, which in turn reduces oxygen, the terminal acceptor. Electron transfer is coupled to transmembrane proton translocation, thus establishing the electrochemical proton gradient that drives ATP synthesis. We isolated, biochemically characterized, and determined the structure of the obligate III2IV2 supercomplex from Mycobacterium smegmatis, a model for Mycobacterium tuberculosis. The supercomplex has quinol:O2 oxidoreductase activity without exogenous cytochrome c and includes a superoxide dismutase subunit that may detoxify reactive oxygen species produced during respiration. We found menaquinone bound in both the Qo and Qi sites of complex III. The complex III-intrinsic diheme cytochrome cc subunit, which functionally replaces both cytochrome c1 and soluble cytochrome c in canonical electron-transport chains, displays two conformations: one in which it provides a direct electronic link to complex IV and another in which it serves as an electrical switch interrupting the connection.

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