6HUM image
Deposition Date 2018-10-09
Release Date 2019-01-09
Last Version Date 2024-05-15
Entry Detail
PDB ID:
6HUM
Title:
Structure of the photosynthetic complex I from Thermosynechococcus elongatus
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.34 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:NAD(P)H-quinone oxidoreductase subunit 1
Gene (Uniprot):ndhA
Chain IDs:A
Chain Length:372
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus BP-1
Polymer Type:polypeptide(L)
Molecule:NAD(P)H-quinone oxidoreductase subunit 2
Gene (Uniprot):ndhB
Chain IDs:E (auth: B)
Chain Length:515
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus BP-1
Polymer Type:polypeptide(L)
Molecule:NAD(P)H-quinone oxidoreductase subunit 3
Gene (Uniprot):ndhC
Chain IDs:B (auth: C)
Chain Length:132
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus BP-1
Polymer Type:polypeptide(L)
Molecule:NAD(P)H-quinone oxidoreductase chain 4 1
Gene (Uniprot):ndhD1
Chain IDs:C (auth: D)
Chain Length:529
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus BP-1
Polymer Type:polypeptide(L)
Molecule:NAD(P)H-quinone oxidoreductase subunit 4L
Gene (Uniprot):ndhE
Chain IDs:D (auth: E)
Chain Length:101
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus BP-1
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase subunit 5
Gene (Uniprot):ndhF1
Chain IDs:M (auth: F)
Chain Length:656
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus BP-1
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase subunit 6
Gene (Uniprot):ndhG
Chain IDs:F (auth: G)
Chain Length:200
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus BP-1
Polymer Type:polypeptide(L)
Molecule:NAD(P)H-quinone oxidoreductase subunit H
Gene (Uniprot):ndhH
Chain IDs:I (auth: H)
Chain Length:394
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus BP-1
Polymer Type:polypeptide(L)
Molecule:NAD(P)H-quinone oxidoreductase subunit I
Gene (Uniprot):ndhI
Chain IDs:J (auth: I)
Chain Length:196
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus BP-1
Polymer Type:polypeptide(L)
Molecule:NAD(P)H-quinone oxidoreductase subunit J
Gene (Uniprot):ndhJ
Chain IDs:G (auth: J)
Chain Length:168
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus BP-1
Polymer Type:polypeptide(L)
Molecule:NAD(P)H-quinone oxidoreductase subunit K
Gene (Uniprot):ndhK
Chain IDs:K
Chain Length:237
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus BP-1
Polymer Type:polypeptide(L)
Molecule:NAD(P)H-quinone oxidoreductase subunit L
Gene (Uniprot):ndhL
Chain IDs:L
Chain Length:76
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus BP-1
Polymer Type:polypeptide(L)
Molecule:NAD(P)H-quinone oxidoreductase subunit M
Gene (Uniprot):ndhM
Chain IDs:O (auth: M)
Chain Length:111
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus BP-1
Polymer Type:polypeptide(L)
Molecule:NAD(P)H-quinone oxidoreductase subunit N
Gene (Uniprot):ndhN
Chain IDs:N
Chain Length:150
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus BP-1
Polymer Type:polypeptide(L)
Molecule:NAD(P)H-quinone oxidoreductase subunit O
Gene (Uniprot):ndhO
Chain IDs:Q (auth: O)
Chain Length:70
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus BP-1
Polymer Type:polypeptide(L)
Molecule:Proton-translocating NADH-quinone dehydrogenase subunit P NdhP
Chain IDs:H (auth: P)
Chain Length:42
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus BP-1
Polymer Type:polypeptide(L)
Molecule:Proton-translocating NADH-quinone dehydrogenase subunit Q NdhQ
Chain IDs:R (auth: Q)
Chain Length:39
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus BP-1
Polymer Type:polypeptide(L)
Molecule:Tlr0636 protein
Gene (Uniprot):tlr0636
Chain IDs:P (auth: S)
Chain Length:110
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus BP-1
Primary Citation
Structural adaptations of photosynthetic complex I enable ferredoxin-dependent electron transfer.
Science 363 257 260 (2019)
PMID: 30573545 DOI: 10.1126/science.aau3613

Abstact

Photosynthetic complex I enables cyclic electron flow around photosystem I, a regulatory mechanism for photosynthetic energy conversion. We report a 3.3-angstrom-resolution cryo-electron microscopy structure of photosynthetic complex I from the cyanobacterium Thermosynechococcus elongatus. The model reveals structural adaptations that facilitate binding and electron transfer from the photosynthetic electron carrier ferredoxin. By mimicking cyclic electron flow with isolated components in vitro, we demonstrate that ferredoxin directly mediates electron transfer between photosystem I and complex I, instead of using intermediates such as NADPH (the reduced form of nicotinamide adenine dinucleotide phosphate). A large rate constant for association of ferredoxin to complex I indicates efficient recognition, with the protein subunit NdhS being the key component in this process.

Legend

Protein

Chemical

Disease

Primary Citation of related structures