ISDA: 6HT5

Deposition Date 2018-10-03

Release Date 2019-10-23

Last Version Date 2024-01-24

Entry Detail

PDB ID:

6HT5

Keywords:

TRANSCRIPTION

Title:

Oct4/Sox2:UTF1 structure

Biological Source:

Source Organism:

Mus musculus (Taxon ID: 10090)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

3.45 Å

R-Value Free:

0.24

R-Value Work:

0.20

R-Value Observed:

0.20

Space Group:

P 63

Download Validation Report

Macromolecular Entities

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*CP*CP*TP*CP*AP*TP*TP*GP*TP*TP*AP*TP*GP*CP*TP*AP*GP*TP*GP*AP*AP*G)-3')
Chain IDs:A
Chain Length:22
Number of Molecules:1
Biological Source:Mus musculus

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*TP*TP*CP*AP*CP*TP*AP*GP*CP*AP*TP*AP*AP*CP*AP*AP*TP*GP*AP*GP*G)-3')
Chain IDs:B
Chain Length:21
Number of Molecules:1
Biological Source:Mus musculus

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Transcription factor SOX-2
Gene (Uniprot):Sox2
Chain IDs:C (auth: D)
Chain Length:83
Number of Molecules:1
Biological Source:Mus musculus

UniProt ID:P48432 Pfam ID:PF00505

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:POU domain, class 5, transcription factor 1
Gene (Uniprot):Pou5f1
Chain IDs:D (auth: E)
Chain Length:154
Number of Molecules:1
Biological Source:Mus musculus

UniProt ID:P20263 Pfam ID:PF00157, PF00046

Ligand Molecules

Primary Citation

Oct4/Sox2:UTF1 structure

Vahokoski, J, Pogenberg, V, Wilmanns, M.Show

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Primary Citation of related structures

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