6HRG image
Entry Detail
PDB ID:
6HRG
Keywords:
Title:
Structure of Igni18, a novel metallo hydrolase from the hyperthermophilic archaeon Ignicoccus hospitalis KIN4/I
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2018-09-26
Release Date:
2019-10-09
Method Details:
Experimental Method:
Resolution:
2.12 Å
R-Value Free:
0.24
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
H 3 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:UPF0173 metal-dependent hydrolase Igni_1254
Chain IDs:A
Chain Length:261
Number of Molecules:1
Biological Source:Ignicoccus hospitalis
Primary Citation
A promiscuous ancestral enzyme ́s structure unveils protein variable regions of the highly diverse metallo-beta-lactamase family.
Commun Biol 4 132 132 (2021)
PMID: 33514861 DOI: 10.1038/s42003-021-01671-8

Abstact

The metallo-β-lactamase fold is an ancient protein structure present in numerous enzyme families responsible for diverse biological processes. The crystal structure of the hyperthermostable crenarchaeal enzyme Igni18 from Ignicoccus hospitalis was solved at 2.3 Å and could resemble a possible first archetype of a multifunctional metallo-β-lactamase. Ancestral enzymes at the evolutionary origin are believed to be promiscuous all-rounders. Consistently, Igni18´s activity can be cofactor-dependently directed from β-lactamase to lactonase, lipase, phosphodiesterase, phosphotriesterase or phospholipase. Its core-domain is highly conserved within metallo-β-lactamases from Bacteria, Archaea and Eukarya and gives insights into evolution and function of enzymes from this superfamily. Structural alignments with diverse metallo-β-lactamase-fold-containing enzymes allowed the identification of Protein Variable Regions accounting for modulation of activity, specificity and oligomerization patterns. Docking of different substrates within the active sites revealed the basis for the crucial cofactor dependency of this enzyme superfamily.

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