6HRA image
Deposition Date 2018-09-26
Release Date 2018-12-05
Last Version Date 2024-10-09
Entry Detail
PDB ID:
6HRA
Title:
Cryo-EM structure of the KdpFABC complex in an E1 outward-facing state (state 1)
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.70 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Potassium-transporting ATPase potassium-binding subunit
Gene (Uniprot):kdpA
Chain IDs:A
Chain Length:557
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Potassium-transporting ATPase ATP-binding subunit
Gene (Uniprot):kdpB
Chain IDs:D (auth: B)
Chain Length:682
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Potassium-transporting ATPase KdpC subunit
Gene (Uniprot):kdpC
Chain IDs:B (auth: C)
Chain Length:190
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Potassium-transporting ATPase KdpF subunit
Gene (Uniprot):kdpF
Chain IDs:C (auth: D)
Chain Length:29
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
SEP D SER modified residue
Primary Citation
Cryo-EM structures of KdpFABC suggest a K+transport mechanism via two inter-subunit half-channels.
Nat Commun 9 4971 4971 (2018)
PMID: 30478378 DOI: 10.1038/s41467-018-07319-2

Abstact

P-type ATPases ubiquitously pump cations across biological membranes to maintain vital ion gradients. Among those, the chimeric K+ uptake system KdpFABC is unique. While ATP hydrolysis is accomplished by the P-type ATPase subunit KdpB, K+ has been assumed to be transported by the channel-like subunit KdpA. A first crystal structure uncovered its overall topology, suggesting such a spatial separation of energizing and transporting units. Here, we report two cryo-EM structures of the 157 kDa, asymmetric KdpFABC complex at 3.7 Å and 4.0 Å resolution in an E1 and an E2 state, respectively. Unexpectedly, the structures suggest a translocation pathway through two half-channels along KdpA and KdpB, uniting the alternating-access mechanism of actively pumping P-type ATPases with the high affinity and selectivity of K+ channels. This way, KdpFABC would function as a true chimeric complex, synergizing the best features of otherwise separately evolved transport mechanisms.

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