6HR5 image
Deposition Date 2018-09-26
Release Date 2019-06-26
Last Version Date 2024-05-15
Entry Detail
PDB ID:
6HR5
Keywords:
Title:
Structure of the S1_25 family sulfatase module of the rhamnosidase FA22250 from Formosa agariphila
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.91 Å
R-Value Free:
0.36
R-Value Work:
0.32
R-Value Observed:
0.32
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Alpha-L-rhamnosidase/sulfatase (GH78)
Gene (Uniprot):BN863_22250
Chain IDs:A
Chain Length:467
Number of Molecules:1
Biological Source:Formosa agariphila KMM 3901
Ligand Molecules
Primary Citation
A marine bacterial enzymatic cascade degrades the algal polysaccharide ulvan.
Nat.Chem.Biol. 15 803 812 (2019)
PMID: 31285597 DOI: 10.1038/s41589-019-0311-9

Abstact

Marine seaweeds increasingly grow into extensive algal blooms, which are detrimental to coastal ecosystems, tourism and aquaculture. However, algal biomass is also emerging as a sustainable raw material for the bioeconomy. The potential exploitation of algae is hindered by our limited knowledge of the microbial pathways-and hence the distinct biochemical functions of the enzymes involved-that convert algal polysaccharides into oligo- and monosaccharides. Understanding these processes would be essential, however, for applications such as the fermentation of algal biomass into bioethanol or other value-added compounds. Here, we describe the metabolic pathway that enables the marine flavobacterium Formosa agariphila to degrade ulvan, the main cell wall polysaccharide of bloom-forming Ulva species. The pathway involves 12 biochemically characterized carbohydrate-active enzymes, including two polysaccharide lyases, three sulfatases and seven glycoside hydrolases that sequentially break down ulvan into fermentable monosaccharides. This way, the enzymes turn a previously unexploited renewable into a valuable and ecologically sustainable bioresource.

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