6HPJ image
Deposition Date 2018-09-21
Release Date 2020-11-18
Last Version Date 2024-05-15
Entry Detail
PDB ID:
6HPJ
Title:
Structure of human SRSF1 RRM1 bound to AACAAA RNA
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Conformers Calculated:
50
Conformers Submitted:
20
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Polymer Type:polyribonucleotide
Molecule:RNA (5'-R(*AP*AP*CP*AP*AP*A)-3')
Chain IDs:B (auth: A)
Chain Length:6
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Immunoglobulin G-binding protein G,Serine/arginine-rich splicing factor 1
Gene (Uniprot):spg, SRSF1
Chain IDs:A (auth: B)
Chain Length:161
Number of Molecules:1
Biological Source:Streptococcus sp. group G, Homo sapiens
Primary Citation
Structure of SRSF1 RRM1 bound to RNA reveals an unexpected bimodal mode of interaction and explains its involvement in SMN1 exon7 splicing.
Nat Commun 12 428 428 (2021)
PMID: 33462199 DOI: 10.1038/s41467-020-20481-w

Abstact

The human prototypical SR protein SRSF1 is an oncoprotein that contains two RRMs and plays a pivotal role in RNA metabolism. We determined the structure of the RRM1 bound to RNA and found that the domain binds preferentially to a CN motif (N is for any nucleotide). Based on this solution structure, we engineered a protein containing a single glutamate to asparagine mutation (E87N), which gains the ability to bind to uridines and thereby activates SMN exon7 inclusion, a strategy that is used to cure spinal muscular atrophy. Finally, we revealed that the flexible inter-RRM linker of SRSF1 allows RRM1 to bind RNA on both sides of RRM2 binding site. Besides revealing an unexpected bimodal mode of interaction of SRSF1 with RNA, which will be of interest to design new therapeutic strategies, this study brings a new perspective on the mode of action of SRSF1 in cells.

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Primary Citation of related structures