6HMZ image
Deposition Date 2018-09-13
Release Date 2018-11-21
Last Version Date 2024-01-24
Entry Detail
PDB ID:
6HMZ
Keywords:
Title:
Crystal Structure of a Single-Domain Cyclophilin from Brassica napus Phloem Sap
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.98 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
I 41 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Cyclosporin
Chain IDs:B (auth: A)
Chain Length:11
Number of Molecules:1
Biological Source:Tolypocladium inflatum
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Peptidyl-prolyl cis-trans isomerase
Gene (Uniprot):BnaA09g35540D
Chain IDs:A (auth: X)
Chain Length:180
Number of Molecules:1
Biological Source:Brassica napus
Primary Citation
Enzyme activity and structural features of three single-domain phloem cyclophilins from Brassica napus.
Sci Rep 9 9368 9368 (2019)
PMID: 31249367 DOI: 10.1038/s41598-019-45856-y

Abstact

Cyclophilins (CYPs) are a group of ubiquitous prolyl cis/trans isomerases (PPIases). It was shown that plants possess the most diverse CYP families and that these are abundant in the phloem long-distance translocation stream. Since phloem exudate showed PPIase activity, three single-domain CYPs that occur in phloem samples from Brassica napus were characterised on functional and structural levels. It could be shown that they exhibit isomerase activity and that this activity is controlled by a redox regulation mechanism, which has been postulated for divergent CYPs. The structure determination by small-angle X-ray scattering experiments revealed a conserved globular shape. In addition, the high-resolution crystal structure of BnCYP19-1 was resolved and refined to 2.0 Å resolution, and the active sites of related CYPs as well as substrate binding were modelled. The obtained data and results support the hypothesis that single domain phloem CYPs are active phloem PPIases that may function as chaperones.

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