6HMA image
Entry Detail
PDB ID:
6HMA
EMDB ID:
EMD-0243
Keywords:
RIBOSOME
Title:
Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit
Biological Source:
Source Organism:
Staphylococcus aureus
PDB Version:
Deposition Date:
2018-09-12
Release Date:
2018-11-14
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
2.65 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
6HMA validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L33
Chain IDs:Z (auth: 1)
Chain Length:47
Number of Molecules:1
Biological Source:Staphylococcus aureus
UniProt ID:Q2FYU6 Pfam ID:PF00471
Protein Blast
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L34
Chain IDs:AA (auth: 2)
Chain Length:43
Number of Molecules:1
Biological Source:Staphylococcus aureus
UniProt ID:Q2FUQ0 Pfam ID:PF00468
Protein Blast
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L35
Chain IDs:BA (auth: 3)
Chain Length:64
Number of Molecules:1
Biological Source:Staphylococcus aureus
UniProt ID:Q2FXQ0 Pfam ID:PF01632
Protein Blast
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L36
Chain IDs:CA (auth: 4)
Chain Length:37
Number of Molecules:1
Biological Source:Staphylococcus aureus
UniProt ID:Q2FW29 Pfam ID:PF00444
Polymer Type:polyribonucleotide
Description:23S ribosomal RNA
Chain IDs:A
Chain Length:2923
Number of Molecules:1
Biological Source:Staphylococcus aureus
Polymer Type:polyribonucleotide
Description:5S ribosomal RNA
Chain IDs:B
Chain Length:115
Number of Molecules:1
Biological Source:Staphylococcus aureus
Protein Blast
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L2
Chain IDs:C
Chain Length:274
Number of Molecules:1
Biological Source:Staphylococcus aureus
UniProt ID:P60430 Pfam ID:PF00181, PF03947
Protein Blast
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L3
Chain IDs:D
Chain Length:215
Number of Molecules:1
Biological Source:Staphylococcus aureus
UniProt ID:Q2FW06 Pfam ID:PF00297
Protein Blast
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L4
Chain IDs:E
Chain Length:206
Number of Molecules:1
Biological Source:Staphylococcus aureus
UniProt ID:Q2FW07 Pfam ID:PF00573
Protein Blast
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L5
Chain IDs:F
Chain Length:158
Number of Molecules:1
Biological Source:Staphylococcus aureus
UniProt ID:Q2FW18 Pfam ID:PF00281, PF00673
Protein Blast
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L6
Chain IDs:G
Chain Length:175
Number of Molecules:1
Biological Source:Staphylococcus aureus
UniProt ID:Q2FW21 Pfam ID:PF00347
Protein Blast
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L13
Chain IDs:H
Chain Length:145
Number of Molecules:1
Biological Source:Staphylococcus aureus
UniProt ID:Q2FW38 Pfam ID:PF00572
Protein Blast
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L14
Chain IDs:I
Chain Length:122
Number of Molecules:1
Biological Source:Staphylococcus aureus
UniProt ID:Q2FW16 Pfam ID:PF00238
Protein Blast
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L15
Chain IDs:J
Chain Length:146
Number of Molecules:1
Biological Source:Staphylococcus aureus
UniProt ID:P0A0F8 Pfam ID:PF00828
Protein Blast
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L16
Chain IDs:K
Chain Length:137
Number of Molecules:1
Biological Source:Staphylococcus aureus
UniProt ID:Q2FW13 Pfam ID:PF00252
Protein Blast
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L17
Chain IDs:L
Chain Length:120
Number of Molecules:1
Biological Source:Staphylococcus aureus
UniProt ID:Q2FW33 Pfam ID:PF01196
Protein Blast
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L18
Chain IDs:M
Chain Length:119
Number of Molecules:1
Biological Source:Staphylococcus aureus
UniProt ID:Q2FW22 Pfam ID:PF00861
Protein Blast
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L19
Chain IDs:N
Chain Length:116
Number of Molecules:1
Biological Source:Staphylococcus aureus
UniProt ID:Q2FZ42 Pfam ID:PF01245
Protein Blast
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L20
Chain IDs:O
Chain Length:116
Number of Molecules:1
Biological Source:Staphylococcus aureus
UniProt ID:Q2FXQ1 Pfam ID:PF00453
Protein Blast
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L21
Chain IDs:P
Chain Length:102
Number of Molecules:1
Biological Source:Staphylococcus aureus
UniProt ID:Q2FXS8 Pfam ID:PF00829
Protein Blast
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L22
Chain IDs:Q
Chain Length:112
Number of Molecules:1
Biological Source:Staphylococcus aureus
UniProt ID:Q2FW11 Pfam ID:PF00237
Protein Blast
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L23
Chain IDs:R
Chain Length:89
Number of Molecules:1
Biological Source:Staphylococcus aureus
UniProt ID:Q2FW08 Pfam ID:PF00276
Protein Blast
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L24
Chain IDs:S
Chain Length:103
Number of Molecules:1
Biological Source:Staphylococcus aureus
UniProt ID:Q2FW17 Pfam ID:PF00467, PF17136
Protein Blast
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L25
Chain IDs:T
Chain Length:94
Number of Molecules:1
Biological Source:Staphylococcus aureus
UniProt ID:Q2FJE0 Pfam ID:PF01386
Protein Blast
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L27
Chain IDs:U
Chain Length:79
Number of Molecules:1
Biological Source:Staphylococcus aureus
UniProt ID:Q2FXT0 Pfam ID:PF01016
Protein Blast
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L28
Chain IDs:V
Chain Length:49
Number of Molecules:1
Biological Source:Staphylococcus aureus
UniProt ID:Q2FZ60 Pfam ID:PF00830
Protein Blast
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L29
Chain IDs:W
Chain Length:67
Number of Molecules:1
Biological Source:Staphylococcus aureus
UniProt ID:Q2FW14 Pfam ID:PF00831
Protein Blast
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L30
Chain IDs:X
Chain Length:58
Number of Molecules:1
Biological Source:Staphylococcus aureus
UniProt ID:P0A0G2 Pfam ID:PF00327
Protein Blast
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L32
Chain IDs:Y (auth: Z)
Chain Length:48
Number of Molecules:1
Biological Source:Staphylococcus aureus
UniProt ID:Q2FZF1 Pfam ID:PF01783
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
2MA A A modified residue
5MU A U modified residue
Ligand Molecules
MG
Primary Citation
Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit
To Be Published ? ? ? (?)
Primary Citation of related structures
4WCE