6HM5 image
Deposition Date 2018-09-12
Release Date 2018-10-17
Last Version Date 2024-11-13
Entry Detail
PDB ID:
6HM5
Keywords:
Title:
Crystal structure of TOPBP1 BRCT0,1,2 in complex with a RAD9 phosphopeptide
Biological Source:
Source Organism:
Gallus gallus (Taxon ID: 9031)
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
2.33 Å
R-Value Free:
0.24
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA topoisomerase II binding protein 1
Gene (Uniprot):TOPBP1
Chain IDs:A
Chain Length:290
Number of Molecules:1
Biological Source:Gallus gallus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cell cycle checkpoint control protein RAD9A
Gene (Uniprot):RAD9A
Chain IDs:B
Chain Length:11
Number of Molecules:1
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
SEP B SER modified residue
Primary Citation
BRCT domains of the DNA damage checkpoint proteins TOPBP1/Rad4 display distinct specificities for phosphopeptide ligands.
Elife 7 ? ? (2018)
PMID: 30295604 DOI: 10.7554/eLife.39979

Abstact

TOPBP1 and its fission yeast homologueRad4, are critical players in a range of DNA replication, repair and damage signalling processes. They are composed of multiple BRCT domains, some of which bind phosphorylated motifs in other proteins. They thus act as multi-point adaptors bringing proteins together into functional combinations, dependent on post-translational modifications downstream of cell cycle and DNA damage signals. We have now structurally and/or biochemically characterised a sufficient number of high-affinity complexes for the conserved N-terminal region of TOPBP1 and Rad4 with diverse phospho-ligands, including human RAD9 and Treslin, and Schizosaccharomyces pombe Crb2 and Sld3, to define the determinants of BRCT domain specificity. We use this to identify and characterise previously unknown phosphorylation-dependent TOPBP1/Rad4-binding motifs in human RHNO1 and the fission yeast homologue of MDC1, Mdb1. These results provide important insights into how multiple BRCT domains within TOPBP1/Rad4 achieve selective and combinatorial binding of their multiple partner proteins.

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Primary Citation of related structures