6HLP image
Deposition Date 2018-09-11
Release Date 2019-01-16
Last Version Date 2024-01-24
Entry Detail
PDB ID:
6HLP
Title:
Crystal structure of the Neurokinin 1 receptor in complex with the small molecule antagonist Netupitant
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.20 Å
R-Value Free:
0.22
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Substance-P receptor,Substance-P receptor
Gene (Uniprot):TACR1, PAB2292
Mutations:L74A; V116I; A144L; M181K; A215L; W224R; K243A,L74A; V116I; A144L; M181K; A215L; W224R; K243A,L74A; V116I; A144L; M181K; A215L; W224R; K243A
Chain IDs:A
Chain Length:520
Number of Molecules:1
Biological Source:Homo sapiens, Pyrococcus abyssi GE5
Primary Citation
Crystal structures of the human neurokinin 1 receptor in complex with clinically used antagonists.
Nat Commun 10 17 17 (2019)
PMID: 30604743 DOI: 10.1038/s41467-018-07939-8

Abstact

Neurokinins (or tachykinins) are peptides that modulate a wide variety of human physiology through the neurokinin G protein-coupled receptor family, implicated in a diverse array of pathological processes. Here we report high-resolution crystal structures of the human NK1 receptor (NK1R) bound to two small-molecule antagonist therapeutics - aprepitant and netupitant and the progenitor antagonist CP-99,994. The structures reveal the detailed interactions between clinically approved antagonists and NK1R, which induce a distinct receptor conformation resulting in an interhelical hydrogen-bond network that cross-links the extracellular ends of helices V and VI. Furthermore, the high-resolution details of NK1R bound to netupitant establish a structural rationale for the lack of basal activity in NK1R. Taken together, these co-structures provide a comprehensive structural basis of NK1R antagonism and will facilitate the design of new therapeutics targeting the neurokinin receptor family.

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